ANALYSIS PROJECT INFORMATION | |
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GOLD Analysis Project ID
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Ga0439259 |
Analysis Project Name |
EAA2017 plot 1 metatranscriptome combined assembly |
Analysis Project Name Suffix
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|
Analysis Project Type
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Combined Assembly |
IMG Submission ID
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241827 |
Completion Status |
Complete |
IMG Completion Date
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2020-10-19 |
PI | Willm Martens-Habbena |
Analysis Project Description
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|
Visibility | Public |
ANALYSIS PROJECT METADATA | |
Assembly Method
(MIGS-30)
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megahit v. 2020-09-22 00:59:05 - MEGAHIT v1.2.9 |
IMG Decontamination
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IMG Decontamination Method
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|
Scaffold Count
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941242 |
Contig Count
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|
Gene Calling Method
(MIGS-32)
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|
Gene Count |
1395851 |
Estimated Size |
787982677 |
Sequencing Depth
(MIGS-31.1)
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|
Genbank Anomalous Assembly |
|
Genbank Anomalous Reason |
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Annotation Pipeline |
IMG Annotation Pipeline v.5.0.19 |
Added By | JGI automated process on 2020-06-13 |
Last Modified By | JGI automated process on 2022-06-18 |
ORF Comparison Tools
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PROJECT EXTERNAL REFERENCES | |
IMG Taxon ID
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3300041948 |
Genbank Accession
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Genbank Release Date |
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SRA Runs |
|
Genome Publication |
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ANALYSIS PROJECT COMPOSITION | |
Study |
Soil microbial communities from Everglades Agricultural Area, Florida, United States |
Number of Studies
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1 |
Number of Biosamples
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6 |
Number of Projects
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6 |
Number of Related Analysis Projects
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12 |
Derived Analysis Projects (DAP)
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1 |
JGI INFORMATION | |
JGI Data Utilization Status
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Unrestricted |
ITS Analysis Project ID
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1281234 (Portal) |
ITS Analysis Project Name
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EAA2017 plot 1 metatranscriptome combined assembly |
ITS Analysis Product Name
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Co-Assembly - Metagenome Metatranscriptome |
ITS Version Number |
1 |
Library Names
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GOTCG, GOTCH, GOTCN, GOTCO, GOTCP, GOTCS |
JGI Award DOI
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10.46936/10.25585/60000949 |
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