Studies
|
56,290 |
|
Biosamples
|
195,545 |
|
Sequencing Projects
|
523,555 |
|
Analysis Projects
|
381,637 |
| Organisms | 484,046 |
| ANALYSIS PROJECT INFORMATION | |
|---|---|
|
GOLD Analysis Project ID
|
Ga0439198 |
| Analysis Project Name |
Combined Assembly of Lab-enriched soil microbial communities from a contaminated agricultural site, Guadeloupe, France (All HCH) |
| Analysis Project Name Stem |
Combined Assembly of |
|
Analysis Project Name Suffix
|
Lab-enriched soil microbial communities from a contaminated agricultural site, Guadeloupe, France (All HCH) |
|
Analysis Project Type
|
Combined Assembly |
|
IMG Submission ID
|
234863 |
| Completion Status |
Complete |
|
IMG Completion Date
|
2020-07-31 |
| PI | Elizabeth A. Edwards |
|
Analysis Project Description
|
Metaspades assembly of all HCH metagenomes |
| Visibility | Public |
| ANALYSIS PROJECT METADATA | |
|
Assembly Method
(MIGS-30)
|
spades v. 3.12.0 |
|
IMG Decontamination
|
No |
|
IMG Decontamination Method
|
|
|
Scaffold Count
|
504479 |
|
Contig Count
|
|
|
Gene Calling Method
(MIGS-32)
|
|
| Gene Count |
1257923 |
| Estimated Size |
956027026 |
|
Sequencing Depth
(MIGS-31.1)
|
|
| Genbank Anomalous Assembly |
|
| Genbank Anomalous Reason |
|
| Annotation Pipeline |
IMG Annotation Pipeline v.5.0.18 |
| Added By | Camilla Nesbø on 2020-06-05 |
| Last Modified By | JGI automated process on 2021-10-11 |
|
ORF Comparison Tools
|
|
| PROJECT EXTERNAL REFERENCES | |
|
IMG Taxon ID
|
3300040744 |
|
Genbank Accession
|
|
| Genbank Release Date |
|
| SRA Runs |
|
| Genome Publication |
|
| ANALYSIS PROJECT COMPOSITION | |
| Study |
Metagenomes of anaerobic enrichment cultures that dechlorinate hexachlorocyclohexane isomers |
|
Number of Studies
|
1 |
|
Number of Biosamples
|
5 |
|
Number of Projects
|
5 |
|
Number of Related Analysis Projects
|
6 |
|
Derived Analysis Projects (DAP)
|
0 |
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