Studies
|
56,336 |
|
Biosamples
|
196,965 |
|
Sequencing Projects
|
525,338 |
|
Analysis Projects
|
385,100 |
| Organisms | 484,220 |
| ANALYSIS PROJECT INFORMATION | |
|---|---|
|
GOLD Analysis Project ID
|
Ga0439031 |
| Analysis Project Name |
Actinotalea sp. SM14_8_bin.1 |
|
Analysis Project Name Suffix
|
|
|
Analysis Project Type
|
Metagenome-Assembled Genome |
|
IMG Submission ID
|
234133 |
|
NCBI BioProject Accession
|
|
|
NCBI BioSample Accession
|
|
| Completion Status |
Complete |
|
IMG Completion Date
|
2020-06-03 |
| PI | Lauren Tom |
|
Analysis Project Description
|
MAG from sorghum-adapted microbial community |
| Visibility | Public |
| ANALYSIS PROJECT METADATA | |
| GOLD Organism Name |
Actinotalea sp. SM14_8_bin.1 |
|
NCBI Taxonomy ID
|
458839 |
| Phylum | ACTINOMYCETOTA |
| Phylogeny Suggestion |
|
|
Genus
|
Actinotalea |
| Species |
Actinotalea sp. SM14_8_bin.1 |
| Strain |
SM14_8_bin.1 |
| Domain |
BACTERIAL |
| NCBI Superkingdom |
Bacteria |
| NCBI Kingdom |
|
|
Number of tRNAs
|
|
|
tRNA Software
|
|
|
Completeness Strategy
|
|
|
Scaffold Count
|
20 |
|
Contig Count
|
|
|
Binning Method
|
MaxBin |
|
Binning Parameters
|
|
|
Reassembly Attempted
|
|
|
MAG Coverage Software
|
|
|
Gene Calling Method
(MIGS-32)
|
|
| Gene Count |
2830 |
| Estimated Size |
2984864 |
|
Sequencing Depth
(MIGS-31.1)
|
|
| Contamination Percentage |
0 |
| Completeness Percentage |
97.11 |
| Genbank Anomalous Assembly |
|
| Genbank Anomalous Reason |
|
| Annotation Pipeline |
IMG Annotation Pipeline v.5.0.15 |
| Added By | Lauren Tom on 2020-05-22 |
| Last Modified By | JGI automated process on 2020-06-20 |
|
ORF Comparison Tools
|
|
|
16S Recovered
|
|
|
16S Recovery Software
|
|
| PROJECT EXTERNAL REFERENCES | |
|
IMG Taxon ID
|
2873517181 |
|
Genbank Accession
|
|
| Genbank Release Date |
|
| Genome Publication |
|
| ANALYSIS PROJECT COMPOSITION | |
| Study |
Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States |
| Source Analysis Project |
Sorghum-adapted microbial communities enriched on stacked mutant (SM) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - SM_Day14_8 |
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