ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0438072
Analysis Project Name Prefix Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.H11
Analysis Project Name Suffix
Analysis Project Type Metagenome - Single Particle Sort
IMG Submission ID 238100
Completion Status Complete
IMG Completion Date 2020-09-01
PI Erik Lilleskov
Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) spades v. 3.14.1
Scaffold Count 145
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 1288
Estimated Size 1142176
Sequencing Depth (MIGS-31.1)
Annotation Pipeline IMG Annotation Pipeline v.5.0.19
Added By JGI automated process on 2020-03-18
Last Modified By JGI automated process on 2020-09-01
Non-SP-Owner AP No
ORF Comparison Tools
16S Recovered
16S Recovery Software
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300041160
Genbank Accession
Assembly Accession
Genbank Release Date
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 0
Derived Analysis Projects (DAP) 0
JGI INFORMATION
ITS Analysis Project ID 1277675 (Portal)
ITS Analysis Project Name Uncultured microbe JGI_Llskov.PC30cm.SYBR.1.H11
ITS Analysis Product Name Single Particle Sort, 16S Negative, Unscreened
ITS Version Number 1

 

 

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