Studies
|
56,118 |
|
Biosamples
|
195,370 |
|
Sequencing Projects
|
519,775 |
|
Analysis Projects
|
381,635 |
| Organisms | 480,441 |
| ANALYSIS PROJECT INFORMATION | |
|---|---|
|
GOLD Analysis Project ID
|
Ga0435177 |
| Analysis Project Name |
Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day12_7 (Metagenome Metatranscriptome Expression - Other) |
| Analysis Project Name Stem |
Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day12_7 |
|
Analysis Project Name Suffix
|
- mapped_to_IMG_dataset_3300033802 expression |
|
Analysis Project Type
|
Metatranscriptome mapping (other) |
|
IMG Submission ID
|
229261 |
| Completion Status |
Incomplete |
|
IMG Completion Date
|
|
| PI | Steven W. Singer |
|
Analysis Project Description
|
|
| Visibility | Public |
| ANALYSIS PROJECT METADATA | |
|
Assembly Method
(MIGS-30)
|
|
|
Scaffold Count
|
|
|
Contig Count
|
|
|
Gene Calling Method
(MIGS-32)
|
|
| Gene Count |
|
| Estimated Size |
|
|
Sequencing Depth
(MIGS-31.1)
|
|
| Genbank Anomalous Assembly |
|
| Genbank Anomalous Reason |
|
| Annotation Pipeline |
|
| Added By | JGI automated process on 2020-02-01 |
| Last Modified By | Supratim Mukherjee on 2023-02-11 |
|
ORF Comparison Tools
|
|
| PROJECT EXTERNAL REFERENCES | |
|
IMG Taxon ID
|
|
| IMG RNA-Seq ID |
9834 |
|
Genbank Accession
|
|
| Genbank Release Date |
|
| ANALYSIS PROJECT COMPOSITION | |
| Study |
Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States |
|
Number of Projects
|
1 |
| Reference Analysis Project |
P4+WT+SM metagenomes combined assembly |
| JGI INFORMATION | |
|
JGI Data Utilization Status
|
Unrestricted |
|
ITS Analysis Project ID
|
1271264 (Portal) |
|
ITS Analysis Project Name
|
SM_Day12_7 metatranscriptome_mapped_to_IMG_dataset_3300033802 expression |
|
ITS Analysis Product Name
|
Metagenome Metatranscriptome Expression - Other |
| ITS Version Number |
2 |
|
Library Names
|
|
|
JGI Award DOI
|
10.46936/10.25585/60000909 |
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