Studies
|
47,490 |
|
Biosamples
|
121,670 |
|
Sequencing Projects
|
389,114 |
|
Analysis Projects
|
310,436 |
| Organisms | 403,379 |
| ANALYSIS PROJECT INFORMATION | |||||
|---|---|---|---|---|---|
|
GOLD Analysis Project ID
|
Ga0416691 |
||||
| Analysis Project Name Prefix |
Unclassified archaeon NM3 |
||||
|
Analysis Project Name Suffix
|
|
||||
|
Analysis Project Type
|
Metagenome-Assembled Genome |
||||
|
IMG Submission ID
|
|||||
|
NCBI BioProject ID
|
|
||||
|
NCBI BioProject Accession
|
PRJNA472146 |
||||
|
NCBI BioSample Accession
|
SAMN10390733 |
||||
| Completion Status |
Incomplete |
||||
|
IMG Completion Date
|
|
||||
| PI | Supratim Mukherjee | ||||
| PI Name |
|
||||
|
Analysis Project Description
|
Submitting a public MAG from NCBI/GenBank to IMG for analysis. |
||||
| Visibility | Public | ||||
| ANALYSIS PROJECT METADATA | |||||
| GOLD Organism Name |
Unclassified archaeon NM3 |
||||
|
NCBI Taxonomy ID
|
1906665 |
||||
| Phylum | UNCLASSIFIED-ARCHAEAL | ||||
| Phylogeny Suggestion |
|
||||
|
Genus
|
|
||||
| Species |
Unclassified archaeon NM3 |
||||
| Strain |
NM3 |
||||
| Domain |
ARCHAEAL |
||||
| NCBI Superkingdom |
Archaea |
||||
| NCBI Kingdom |
|
||||
|
Number of tRNAs
|
|
||||
|
tRNA Software
|
|
||||
|
Completeness Strategy
|
|
||||
|
Scaffold Count
|
|
||||
|
Contig Count
|
|
||||
|
Binning Method
|
ESOM, MetaBAT62, ABAWACA 1.07, MaxBin 2.0 and CONCOT |
||||
|
Binning Parameters
|
|
||||
|
Reassembly Attempted
|
|
||||
|
MAG Coverage Software
|
|
||||
|
Gene Calling Method
(MIGS-32)
|
|
||||
| Gene Count |
|
||||
| Estimated Size |
|
||||
|
Sequencing Depth
(MIGS-31.1)
|
|
||||
| Contamination Percentage |
|
||||
| Completeness Percentage |
|
||||
| Annotation Pipeline |
|
||||
| Added By |
JGI automated process
on 2019-10-23 |
||||
| Last Modified By | |||||
|
ORF Comparison Tools
|
|
||||
|
16S Recovered
|
|
||||
|
16S Recovery Software
|
|
||||
| PROJECT EXTERNAL REFERENCES | |||||
|
IMG Taxon ID
|
|
||||
|
Genbank Accession
|
|
||||
| Assembly Accession |
GCA_004212155.1 |
||||
| Genbank Release Date |
|
||||
| MAG Publication |
|
||||
| ANALYSIS PROJECT COMPOSITION | |||||
| Study |
Placeholder Study to act as source MetG for MAGs |
||||
| Source Analysis Project |
Placeholder Project to act as source MetG for MAGs |
||||
You are going to add the following user to your analysis project, project, biosample and study.
Contact Name/Email: Do you want to continue?
You are going to remove permissions for the following user to your analysis project, project, biosample and study.
Contact Name/Email: Do you want to continue?
Changing the AP visibility will also change visibility on the following items:
Do you want to continue with this visibility change?
Changing the AP visibility will also change downgrade visibility on the following items:
Do you want to continue with this visibility change?
