Studies
|
56,035 |
|
Biosamples
|
191,586 |
|
Sequencing Projects
|
515,842 |
|
Analysis Projects
|
381,622 |
| Organisms | 480,341 |
| ANALYSIS PROJECT INFORMATION | |||||
|---|---|---|---|---|---|
|
GOLD Analysis Project ID
|
Ga0415725 |
||||
| Analysis Project Name |
Halanaerobium sp. 4-GBenrich |
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|
Analysis Project Name Suffix
|
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|
Analysis Project Type
|
Metagenome-Assembled Genome |
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|
IMG Submission ID
|
|||||
|
NCBI BioProject Accession
|
PRJNA308326 |
||||
|
NCBI BioSample Accession
|
SAMN05172290 |
||||
| Completion Status |
Incomplete |
||||
|
IMG Completion Date
|
|
||||
| PI | Supratim Mukherjee | ||||
|
Analysis Project Description
|
Submitting a public MAG from NCBI/GenBank to IMG for analysis. |
||||
| Visibility | Public | ||||
| ANALYSIS PROJECT METADATA | |||||
| GOLD Organism Name |
Halanaerobium sp. 4-GBenrich |
||||
|
NCBI Taxonomy ID
|
1884872 |
||||
| Phylum | FIRMICUTES | ||||
| Phylogeny Suggestion |
|
||||
|
Genus
|
Halanaerobium |
||||
| Species |
Halanaerobium sp. 4-GBenrich |
||||
| Strain |
4-GBenrich |
||||
| Domain |
BACTERIAL |
||||
| NCBI Superkingdom |
Bacteria |
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| NCBI Kingdom |
|
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|
Number of tRNAs
|
|
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|
tRNA Software
|
|
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|
Completeness Strategy
|
|
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|
Scaffold Count
|
|
||||
|
Contig Count
|
|
||||
|
Binning Method
|
Custom binning using USEARCH, KEGG Orthology |
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|
Binning Parameters
|
|
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|
Reassembly Attempted
|
|
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|
MAG Coverage Software
|
|
||||
|
Gene Calling Method
(MIGS-32)
|
|
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| Gene Count |
|
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| Estimated Size |
|
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|
Sequencing Depth
(MIGS-31.1)
|
|
||||
| Contamination Percentage |
|
||||
| Completeness Percentage |
|
||||
| Genbank Anomalous Assembly |
No |
||||
| Genbank Anomalous Reason |
|
||||
| Annotation Pipeline |
|
||||
| Added By | JGI automated process on 2019-10-23 | ||||
| Last Modified By | |||||
|
ORF Comparison Tools
|
|
||||
|
16S Recovered
|
|
||||
|
16S Recovery Software
|
|
||||
| PROJECT EXTERNAL REFERENCES | |||||
|
IMG Taxon ID
|
|
||||
|
Genbank Accession
|
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| Genbank Release Date |
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| Genome Publication |
|
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| ANALYSIS PROJECT COMPOSITION | |||||
| Study |
Placeholder Study to act as source MetG for MAGs |
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| Source Analysis Project |
Placeholder Project to act as source MetG for MAGs |
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