Studies
|
56,289 |
|
Biosamples
|
195,532 |
|
Sequencing Projects
|
523,542 |
|
Analysis Projects
|
381,637 |
| Organisms | 484,046 |
| ANALYSIS PROJECT INFORMATION | |
|---|---|
|
GOLD Analysis Project ID
|
Ga0411631 |
| Analysis Project Name |
Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen2, Rep 1, Chloramphenicol (Eukaryote Community Metatranscriptome) |
| Analysis Project Name Stem |
Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen2, Rep 1, Chloramphenicol |
|
Analysis Project Name Suffix
|
(v2) |
|
Analysis Project Type
|
Metatranscriptome Analysis |
|
IMG Submission ID
|
226775 |
| Completion Status |
Complete |
|
IMG Completion Date
|
2020-03-17 |
| PI | Michelle O'Malley |
|
Analysis Project Description
|
|
| Visibility | Public |
| ANALYSIS PROJECT METADATA | |
|
Assembly Method
(MIGS-30)
|
megahit v. 1.1.2 |
|
Scaffold Count
|
33584 |
|
Contig Count
|
|
|
Gene Calling Method
(MIGS-32)
|
|
| Gene Count |
34631 |
| Estimated Size |
39794029 |
|
Sequencing Depth
(MIGS-31.1)
|
|
| Genbank Anomalous Assembly |
|
| Genbank Anomalous Reason |
|
| Annotation Pipeline |
IMG Annotation Pipeline v.5.0.11 |
| Added By | JGI automated process on 2019-10-08 |
| Last Modified By | Supratim Mukherjee on 2023-02-11 |
|
ORF Comparison Tools
|
|
| PROJECT EXTERNAL REFERENCES | |
|
IMG Taxon ID
|
3300037879 |
| IMG RNA-Seq ID |
|
|
Genbank Accession
|
|
| Genbank Release Date |
|
| SRA Runs |
|
| ANALYSIS PROJECT COMPOSITION | |
| Study |
Determining the genomic basis for interactions between gut fungi and methanogenic archaea |
|
Number of Studies
|
1 |
|
Number of Biosamples
|
1 |
|
Number of Projects
|
1 |
|
Number of Related Analysis Projects
|
2 |
| JGI INFORMATION | |
|
JGI Data Utilization Status
|
Unrestricted |
|
ITS Analysis Project ID
|
1261909 (Portal) |
|
ITS Analysis Project Name
|
Goat fecal pellet Enrichment Culture - Bagasse, Gen2, Rep 1, treated with Chloramphenicol(v2) |
|
ITS Analysis Product Name
|
Eukaryote Community Metatranscriptome |
| ITS Version Number |
2 |
|
Library Names
|
GPZCX |
|
JGI Award DOI
|
10.46936/10.25585/60001061 |
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