Studies
|
56,036 |
|
Biosamples
|
191,586 |
|
Sequencing Projects
|
515,942 |
|
Analysis Projects
|
381,633 |
| Organisms | 480,439 |
| ANALYSIS PROJECT INFORMATION | |
|---|---|
|
GOLD Analysis Project ID
|
Ga0402096 |
| Analysis Project Name |
Enriched cells of cold seep sediment from Santa Monica Basin, California, United States - ANME aggregate JGI_Orphan.7059.BNCT.2.N9 |
|
Analysis Project Name Suffix
|
|
|
Analysis Project Type
|
Metagenome - Cell Enrichment |
|
IMG Submission ID
|
222651 |
| Completion Status |
Complete |
|
IMG Completion Date
|
2019-11-18 |
| PI | Victoria Orphan |
|
Analysis Project Description
|
|
| Visibility | Public |
| ANALYSIS PROJECT METADATA | |
|
Assembly Method
(MIGS-30)
|
spades v. 3.13.0 |
|
Scaffold Count
|
689 |
|
Contig Count
|
|
|
Gene Calling Method
(MIGS-32)
|
|
| Gene Count |
5710 |
| Estimated Size |
5348090 |
|
Sequencing Depth
(MIGS-31.1)
|
|
| Genbank Anomalous Assembly |
|
| Genbank Anomalous Reason |
|
| Annotation Pipeline |
IMG Annotation Pipeline v.5.0.3 |
| Added By | JGI automated process on 2019-10-04 |
| Last Modified By | JGI automated process on 2022-05-25 |
|
ORF Comparison Tools
|
|
| PROJECT EXTERNAL REFERENCES | |
|
IMG Taxon ID
|
3300036210 |
|
Genbank Accession
|
|
| Genbank Release Date |
|
| SRA Runs |
|
| ANALYSIS PROJECT COMPOSITION | |
| Study |
Enriched cells of cold seep sediment from various locations in Pacific Ocean |
|
Number of Studies
|
1 |
|
Number of Biosamples
|
1 |
|
Number of Projects
|
1 |
|
Number of Related Analysis Projects
|
0 |
|
Derived Analysis Projects (DAP)
|
0 |
| JGI INFORMATION | |
|
JGI Data Utilization Status
|
Unrestricted |
|
ITS Analysis Project ID
|
1258164 (Portal) |
|
ITS Analysis Project Name
|
ANME aggregate JGI_Orphan.7059.BNCT.2.N9 |
|
ITS Analysis Product Name
|
Amplified, Targeted, Cell Enrichment |
| ITS Version Number |
1 |
|
Library Names
|
GSPWZ |
|
JGI Award DOI
|
10.46936/fics.proj.2017.49956/60006219 |
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