Studies
|
46,470 |
|
Biosamples
|
121,078 |
|
Sequencing Projects
|
382,136 |
|
Analysis Projects
|
294,543 |
| Organisms | 397,251 |
| ANALYSIS PROJECT INFORMATION | |
|---|---|
|
GOLD Analysis Project ID
|
Ga0401698 |
| Analysis Project Name Prefix |
Environmental water column metatranscriptomes combined assembly |
|
Analysis Project Name Suffix
|
|
|
Analysis Project Type
|
Combined Assembly |
|
IMG Submission ID
|
234126 |
| Completion Status |
Complete |
|
IMG Completion Date
|
2020-05-22 |
| PI | Steven Wilhelm |
| PI Name |
|
|
Analysis Project Description
|
|
| Visibility | Public |
| ANALYSIS PROJECT METADATA | |
|
Assembly Method
(MIGS-30)
|
megahit v. 2020-05-03 00:07:09 - MEGAHIT v1.2.9 |
|
IMG Decontamination
|
|
|
IMG Decontamination Method
|
|
|
Scaffold Count
|
2948895 |
|
Contig Count
|
|
|
Gene Calling Method
(MIGS-32)
|
|
| Gene Count |
4073689 |
| Estimated Size |
2762866098 |
|
Sequencing Depth
(MIGS-31.1)
|
|
| Annotation Pipeline |
IMG Annotation Pipeline v.5.0.15 |
| Added By |
JGI automated process
on 2019-09-26 |
| Last Modified By |
JGI automated process
on 2020-11-07 |
|
ORF Comparison Tools
|
|
|
16S Recovered
|
|
|
16S Recovery Software
|
|
| PROJECT EXTERNAL REFERENCES | |
|
IMG Taxon ID
|
3300039354 |
|
Genbank Accession
|
|
| Assembly Accession |
|
| Genbank Release Date |
|
| ANALYSIS PROJECT COMPOSITION | |
| Study |
Seawater microbial communities from the Antarctic Ocean |
|
Number of Studies
|
1 |
|
Number of Biosamples
|
22 |
|
Number of Projects
|
22 |
|
Number of Related Analysis Projects
|
44 |
|
Derived Analysis Projects (DAP)
|
1 |
| JGI INFORMATION | |
|
ITS Analysis Project ID
|
1260737 (Portal) |
|
ITS Analysis Project Name
|
Environmental water column metatranscriptomes combined assembly |
|
ITS Analysis Product Name
|
Co-Assembly - Metagenome Metatranscriptome |
| ITS Version Number |
1 |
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