ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0401328
Analysis Project Name Prefix Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - F18NovB
Analysis Project Name Suffix
Analysis Project Type Metatranscriptome Analysis
IMG Submission ID 227905
Completion Status Complete
IMG Completion Date 2020-03-04
PI Samuel Hylander
Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) megahit v. MEGAHIT v1.1.2
Scaffold Count 228124
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 255161
Estimated Size 120066969
Sequencing Depth (MIGS-31.1)
Annotation Pipeline IMG Annotation Pipeline v.5.0.12
Added By JGI automated process on 2019-09-19
Last Modified By JGI automated process on 2020-03-04
Non-SP-Owner AP No
ORF Comparison Tools
16S Recovered
16S Recovery Software
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300037798
IMG RNA-Seq ID
Genbank Accession
Assembly Accession
Genbank Release Date
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Marin sediment microbial communities from Baltic Sea, Sweden
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 1
JGI INFORMATION
ITS Analysis Project ID 1250064 (Portal)
ITS Analysis Project Name F18NovB metaT Annotation
ITS Analysis Product Name Metagenome Metatranscriptome
ITS Version Number 1

 

 

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