ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0400390
Analysis Project Name Prefix Shigella sonnei ECCTRSRTH03
Analysis Project Name Suffix
Analysis Project Type Genome Analysis
IMG Submission ID
Completion Status Incomplete
IMG Completion Date
PI
Description Submitting a public genome from NCBI/GenBank to IMG for analysis.
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) SPAdes v. 3.1.1
IMG Decontamination No
IMG Decontamination Method
GenePRIMP No
Scaffold Count 12
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 4956
Estimated Size 4985900
Sequencing Depth (MIGS-31.1) 138.05x
Annotation Pipeline
Added By JGI automated process on 2019-08-29
Last Modified By
Non-SP-Owner AP No
PROJECT EXTERNAL REFERENCES
IMG Taxon ID
IMG RNA-Seq ID
Genbank
Genbank ID CP041112 (GCA_002246595.3)
Release Date 2019-08-03
NCBI Genbank Version CP041112.1
Genbank ID CP041121 (GCA_002246595.3)
Release Date 2019-08-03
NCBI Genbank Version CP041121.1
Genbank ID CP041116 (GCA_002246595.3)
Release Date 2019-08-03
NCBI Genbank Version CP041116.1
Genbank ID CP041115 (GCA_002246595.3)
Release Date 2019-08-03
NCBI Genbank Version CP041115.1
Genbank ID CP041114 (GCA_002246595.3)
Release Date 2019-08-03
NCBI Genbank Version CP041114.1
Genbank ID CP041113 (GCA_002246595.3)
Release Date 2019-08-03
NCBI Genbank Version CP041113.1
Genbank ID CP041111 (GCA_002246595.3)
Release Date 2019-08-03
NCBI Genbank Version CP041111.1
Genbank ID CP041119 (GCA_002246595.3)
Release Date 2019-08-03
NCBI Genbank Version CP041119.1
Genbank ID CP041118 (GCA_002246595.3)
Release Date 2019-08-03
NCBI Genbank Version CP041118.1
Genbank ID CP041117 (GCA_002246595.3)
Release Date 2019-08-03
NCBI Genbank Version CP041117.1
Genbank ID CP041110 (GCA_002246595.3)
Release Date 2019-08-03
NCBI Genbank Version CP041110.1
Genbank ID CP041120 (GCA_002246595.3)
Release Date 2019-08-03
NCBI Genbank Version CP041120.1
Assembly Accession GCA_002246595.3
Genbank Release Date 2019-08-03
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study GCID Multi-drug resistant Gram-negative clinical isolates from Thailand
Number of Studies 1
Number of Projects 1
Number of Related Analysis Projects 1
Derived Analysis Projects 0

 

 

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