ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0400298
Analysis Project Name Prefix Metatranscriptome of photosynthetic mat microbial communities from Mushroom Spring, YNP, Wyoming, United States - 20090730 1405 sample R13cd
Analysis Project Name Suffix
Analysis Project Type Metatranscriptome Analysis
IMG Submission ID 226843
Completion Status Complete
IMG Completion Date 2020-03-01
PI Devaki Bhaya
Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) megahit v. MEGAHIT v1.1.2
Scaffold Count 257992
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 312325
Estimated Size 128143454
Sequencing Depth (MIGS-31.1)
Annotation Pipeline IMG Annotation Pipeline v.5.0.12
Added By JGI automated process on 2019-08-28
Last Modified By JGI automated process on 2020-06-27
Non-SP-Owner AP No
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300037710
IMG RNA-Seq ID
Genbank Accession
Assembly Accession
Genbank Release Date
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 1
JGI INFORMATION
ITS Analysis Project ID 1254958 (Portal)
ITS Analysis Project Name Metatranscriptome of hot spring photosynthetic mat communities from Mushroom Spring 20090730 1405 sample R13cd Annotation
ITS Analysis Product Name Metagenome Metatranscriptome
ITS Version Number

 

 

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