ANALYSIS PROJECT INFORMATION | |||
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GOLD Analysis Project ID
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Ga0395514 |
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Analysis Project Name Prefix |
Thiotricheae bacterium A1423 |
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Analysis Project Name Suffix
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Analysis Project Type
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Metagenome-Assembled Genome |
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IMG Submission ID
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217682 | ||
NCBI BioProject ID
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NCBI BioProject Accession
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NCBI BioSample Accession
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SAMN09006832 |
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Completion Status |
Complete |
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IMG Completion Date
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2019-09-18 |
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PI | Yuanning Li | ||
Description
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Submitting n public MAG from NCBI to IMG |
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Visibility | Public | ||
ANALYSIS PROJECT METADATA | |||
GOLD Organism Name |
Thiotricheae bacterium A1423 |
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NCBI Taxonomy ID
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135617 |
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Phylum | PROTEOBACTERIA-GAMMA | ||
Phylogeny Suggestion |
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Domain |
BACTERIAL |
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NCBI Superkingdom |
Bacteria |
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NCBI Kingdom |
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Assembly Method
(MIGS-30)
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IMG Decontamination
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No |
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IMG Decontamination Method
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GenePRIMP |
No |
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Scaffold Count
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323 |
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Contig Count
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Binning Method
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BLASTx, Quast 4.5 |
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Gene Calling Method
(MIGS-32)
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Gene Count |
4022 |
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Estimated Size |
3528536 |
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Sequencing Depth
(MIGS-31.1)
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Contamination Percentage |
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Completeness Percentage |
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Annotation Pipeline |
IMG Annotation Pipeline v.5.0.3 |
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Added By |
Supratim Mukherjee
on 2019-08-05 |
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Last Modified By |
JGI automated process
on 2019-09-30 |
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Non-SP-Owner AP |
No |
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PROJECT EXTERNAL REFERENCES | |||
IMG Taxon ID
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2835554630 |
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IMG RNA-Seq ID |
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Genbank
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Assembly Accession |
GCA_003349935.1 |
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Genbank Release Date |
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SRA Runs |
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MAG Publication |
12(11):2785-2795
Endosymbiont genomes yield clues of tubeworm success.
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ANALYSIS PROJECT COMPOSITION | |||
Study |
Tubeworm host-associated microbial communities from Mississippi Canyon, USA |
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Source Analysis Project |
Tubeworm host-associated microbial communities from cold seep in Mississippi Canyon, USA - Seepiophila jonesi |
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Derived Analysis Projects
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0 |
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