ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0394956
Analysis Project Name Prefix Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp03_R74
Analysis Project Name Suffix
Analysis Project Type Metatranscriptome Analysis
IMG Submission ID 222420
Completion Status Complete
IMG Completion Date 2020-01-06
PI Steven Wilhelm
Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) megahit v. MEGAHIT v1.1.2
IMG Decontamination
IMG Decontamination Method
GenePRIMP
Scaffold Count 500755
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 629359
Estimated Size 318319105
Sequencing Depth (MIGS-31.1)
Annotation Pipeline IMG Annotation Pipeline v.5.0.9
Added By JGI automated process on 2019-07-23
Last Modified By JGI automated process on 2020-01-06
Non-SP-Owner AP No
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300037079
IMG RNA-Seq ID
Genbank
Assembly Accession
Genbank Release Date
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Seawater microbial communities from the Antarctic Ocean
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 1
Derived Analysis Projects 1
JGI INFORMATION
ITS Analysis Project ID 1251410 (Portal)
ITS Analysis Project Name ParticleExp03_R74 metatranscriptome Annotation
ITS Analysis Product Name Metagenome Metatranscriptome
ITS NCBI Taxon ID
ITS Version Number

 

 

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