Studies
|
54,050 |
|
Biosamples
|
174,371 |
|
Sequencing Projects
|
485,175 |
|
Analysis Projects
|
368,782 |
| Organisms | 468,042 |
| ANALYSIS PROJECT INFORMATION | |
|---|---|
|
GOLD Analysis Project ID
|
Ga0394675 |
| Analysis Project Name |
Terrestrial subsurface fluid microbial community from Deep Mine Microbial Observatory in Lead, South Dakota, USA - DeMMO2 v2 |
| Analysis Project Name Stem |
Terrestrial subsurface fluid microbial community from Deep Mine Microbial Observatory in Lead, South Dakota, USA - DeMMO2 |
|
Analysis Project Name Suffix
|
v2 |
|
Analysis Project Type
|
Metagenome Analysis |
|
IMG Submission ID
|
215671 |
| Completion Status |
Complete |
|
IMG Completion Date
|
2020-03-30 |
| PI | Magdalena Osburn |
|
Analysis Project Description
|
Metagenome assembled from microbial DNA extracted from 10L of subsurface aquifer fluids collected 800 feet below surface from DeMMO2 borehole. |
| Visibility | Public |
| ANALYSIS PROJECT METADATA | |
|
Assembly Method
(MIGS-30)
|
Megahit v. 1.0.6.1 |
|
Scaffold Count
|
119255 |
|
Contig Count
|
119255 |
|
Gene Calling Method
(MIGS-32)
|
|
| Gene Count |
394143 |
| Estimated Size |
326679984 |
|
Sequencing Depth
(MIGS-31.1)
|
|
| Genbank Anomalous Assembly |
|
| Genbank Anomalous Reason |
|
| Annotation Pipeline |
IMG Annotation Pipeline v.5.0.14 |
| Added By |
Caitlin Casar
on 2019-07-15 |
| Last Modified By |
JGI automated process
on 2021-10-11 |
|
ORF Comparison Tools
|
|
| PROJECT EXTERNAL REFERENCES | |
|
IMG Taxon ID
|
3300038439 |
| IMG Metagenome bin count | 0 |
| IMG Predicted viruses |
|
|
Genbank Accession
|
|
| Genbank Release Date |
|
| SRA Runs |
|
| ANALYSIS PROJECT COMPOSITION | |
| Study |
Terrestrial subsurface fluid microbial community from Deep Mine Microbial Observatory in Lead, South Dakota, USA |
|
Number of Studies
|
1 |
|
Number of Biosamples
|
1 |
|
Number of Projects
|
1 |
|
Number of Related Analysis Projects
|
1 |
|
Derived Analysis Projects (DAP)
|
0 |
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