Studies
|
56,035 |
|
Biosamples
|
191,586 |
|
Sequencing Projects
|
515,741 |
|
Analysis Projects
|
381,586 |
| Organisms | 480,240 |
| ANALYSIS PROJECT INFORMATION | |
|---|---|
|
GOLD Analysis Project ID
|
Ga0394660 |
| Analysis Project Name |
Epsilonproteobacteria bacterium SCGC AD-308-C14v3 (contamination screened) decontaminated |
| Analysis Project Name Stem |
Epsilonproteobacteria bacterium SCGC AD-308-C14v3 |
|
Analysis Project Name Suffix
|
decontaminated |
|
Analysis Project Type
|
Single Cell Analysis (screened) |
|
IMG Submission ID
|
219173 |
| Completion Status |
Complete |
|
IMG Completion Date
|
2019-09-18 |
| PI | Steven Hallam |
|
Analysis Project Description
|
Marine pelagic microbial single-cell genomes from the Northastern Subarctic Pacific Ocean (NESAP) and Saanich Inlet, Strait of Georgia, Northeast Pacific Ocean |
|
Contamination Screening Method
|
|
| Visibility | Public |
| ANALYSIS PROJECT METADATA | |
|
Assembly Method
(MIGS-30)
|
Spades v.3.9 |
|
IMG Decontamination
|
|
|
IMG Decontamination Method
|
|
|
Number of tRNAs
|
|
|
tRNA Software
|
|
|
Completeness Strategy
|
|
|
Scaffold Count
|
11 |
|
Contig Count
|
|
|
Gene Calling Method
(MIGS-32)
|
|
| Gene Count |
379 |
| Estimated Size |
344101 |
|
Sequencing Depth
(MIGS-31.1)
|
|
| Genbank Anomalous Assembly |
|
| Genbank Anomalous Reason |
|
| Annotation Pipeline |
IMG Annotation Pipeline v.5.0.3 |
| Added By | Alvaro M. Plominsky on 2019-07-12 |
| Last Modified By | JGI automated process on 2023-03-03 |
|
ORF Comparison Tools
|
|
|
16S Recovered
|
|
|
16S Recovery Software
|
|
| PROJECT EXTERNAL REFERENCES | |
|
IMG Taxon ID
|
2835904282 |
|
Genbank Accession
|
|
| Genbank Release Date |
|
| ANALYSIS PROJECT COMPOSITION | |
| Study |
Single-cell microbial genomes from expanding oxygen minimum zones (OMZs) of the northeastern subarctic Pacific Ocean (NESAP) |
|
Number of Studies
|
1 |
|
Number of Projects
|
1 |
|
Number of Related Analysis Projects
|
2 |
| JGI INFORMATION | |
|
JGI Data Utilization Status
|
Unrestricted |
|
ITS Analysis Project ID
|
1423975 (Portal) |
|
ITS Analysis Project Name
|
Epsilonproteobacteria bacterium SCGC AD-308-C14v3 decontaminated |
|
ITS Analysis Product Name
|
Microbial Minimal Draft Single Cell Screened Genome |
| ITS Version Number |
2 |
|
Library Names
|
|
|
JGI Award DOI
|
10.46936/10.25585/60000761 |
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