ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0394512
Analysis Project Name Prefix Epsilonproteobacteria bacterium SCGC AD-311-O20
Analysis Project Name Suffix decontaminated
Analysis Project Type Single Cell Analysis (screened)
IMG Submission ID 219217
Completion Status Complete
IMG Completion Date 2019-11-12
PI Steven J. Hallam
Analysis Project Description Marine pelagic microbial single-cell genomes from the Northastern Subarctic Pacific Ocean (NESAP) and Saanich Inlet, Strait of Georgia, Northeast Pacific Ocean
Contamination Screening Method
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) Spades v.3.9
IMG Decontamination
IMG Decontamination Method
Number of tRNAs
tRNA Software
Completeness Strategy
Scaffold Count 61
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 2012
Estimated Size 1873386
Sequencing Depth (MIGS-31.1)
Annotation Pipeline IMG Annotation Pipeline v.5.0.3
Added By Alvaro M. Plominsky on 2019-07-12
Last Modified By JGI automated process on 2019-11-22
ORF Comparison Tools
16S Recovered
16S Recovery Software
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 2841929214
IMG Metagenome bin count
IMG Predicted viruses
Genbank Accession
Genbank Release Date
ANALYSIS PROJECT COMPOSITION
Study Single-cell microbial genomes from expanding oxygen minimum zones (OMZs) of the northeastern subarctic Pacific Ocean (NESAP)
Number of Studies 1
Number of Projects 1
Number of Related Analysis Projects 2

 

 

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