ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0392627
Analysis Project Name Prefix uncultured Thaumarchaeota SCGC SAG AB-747_D17
Analysis Project Name Suffix decontaminated
Analysis Project Type Single Cell Analysis (screened)
IMG Submission ID 236270
Completion Status Complete
IMG Completion Date 2020-07-31
PI Steven J. Hallam
PI Name
Analysis Project Description Marine pelagic microbial single-cell genomes from Saanich Inlet, Strait of Georgia, Northeast Pacific Ocean
Contamination Screening Method
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) Spades v3.9
IMG Decontamination
IMG Decontamination Method Decontaminated with ProDeGe v2.3 and CheckM v1.0.5
Number of tRNAs
tRNA Software
Completeness Strategy
Scaffold Count 67
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 723
Estimated Size 493428
Sequencing Depth (MIGS-31.1)
Annotation Pipeline IMG Annotation Pipeline v.5.0.18
Added By Alvaro M. Plominsky on 2019-05-30
Last Modified By JGI automated process on 2020-08-15
ORF Comparison Tools
16S Recovered
16S Recovery Software
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 2880827348
Genbank Accession
Assembly Accession
Genbank Release Date
ANALYSIS PROJECT COMPOSITION
Study Microbial Systems Ecology of Expanding Oxygen Minimum Zones in the Northeast subarctic Pacific Ocean
Number of Studies 1
Number of Projects 1
Number of Related Analysis Projects 0

 

 

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