Studies
|
56,290 |
|
Biosamples
|
195,545 |
|
Sequencing Projects
|
523,555 |
|
Analysis Projects
|
381,637 |
| Organisms | 484,046 |
| ANALYSIS PROJECT INFORMATION | |
|---|---|
|
GOLD Analysis Project ID
|
Ga0392627 |
| Analysis Project Name |
uncultured Thaumarchaeota SCGC SAG AB-747_D17 decontaminated |
| Analysis Project Name Stem |
uncultured Thaumarchaeota SCGC SAG AB-747_D17 |
|
Analysis Project Name Suffix
|
decontaminated |
|
Analysis Project Type
|
Single Cell Analysis (screened) |
|
IMG Submission ID
|
236270 |
| Completion Status |
Complete |
|
IMG Completion Date
|
2020-07-31 |
| PI | Steven J. Hallam |
|
Analysis Project Description
|
Marine pelagic microbial single-cell genomes from Saanich Inlet, Strait of Georgia, Northeast Pacific Ocean |
|
Contamination Screening Method
|
|
| Visibility | Public |
| ANALYSIS PROJECT METADATA | |
|
Assembly Method
(MIGS-30)
|
Spades v3.9 |
|
IMG Decontamination
|
|
|
IMG Decontamination Method
|
Decontaminated with ProDeGe v2.3 and CheckM v1.0.5 |
|
Number of tRNAs
|
|
|
tRNA Software
|
|
|
Completeness Strategy
|
|
|
Scaffold Count
|
67 |
|
Contig Count
|
|
|
Gene Calling Method
(MIGS-32)
|
|
| Gene Count |
723 |
| Estimated Size |
493428 |
|
Sequencing Depth
(MIGS-31.1)
|
|
| Genbank Anomalous Assembly |
|
| Genbank Anomalous Reason |
|
| Annotation Pipeline |
IMG Annotation Pipeline v.5.0.18 |
| Added By | Alvaro M. Plominsky on 2019-05-30 |
| Last Modified By | JGI automated process on 2020-08-15 |
|
ORF Comparison Tools
|
|
|
16S Recovered
|
|
|
16S Recovery Software
|
|
| PROJECT EXTERNAL REFERENCES | |
|
IMG Taxon ID
|
2880827348 |
|
Genbank Accession
|
|
| Genbank Release Date |
|
| ANALYSIS PROJECT COMPOSITION | |
| Study |
Microbial Systems Ecology of Expanding Oxygen Minimum Zones in the Northeast subarctic Pacific Ocean |
|
Number of Studies
|
1 |
|
Number of Projects
|
1 |
|
Number of Related Analysis Projects
|
0 |
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