ANALYSIS PROJECT INFORMATION | |
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GOLD Analysis Project ID
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Ga0376431 |
Analysis Project Name Prefix |
Enriched cells from marin sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.PSCntrl.SYBR.02.J7 |
Analysis Project Name Suffix
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Analysis Project Type
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Metagenome - Cell Enrichment |
IMG Submission ID
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211213 |
Completion Status |
Complete |
IMG Completion Date
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2019-11-11 |
PI | Roland Hatzenpichler |
Description
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|
Visibility | Public |
ANALYSIS PROJECT METADATA | |
Assembly Method
(MIGS-30)
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spades v. 3.13.0 |
IMG Decontamination
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|
IMG Decontamination Method
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|
GenePRIMP |
|
Scaffold Count
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252 |
Contig Count
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|
Gene Calling Method
(MIGS-32)
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|
Gene Count |
1727 |
Estimated Size |
1504108 |
Sequencing Depth
(MIGS-31.1)
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|
Annotation Pipeline |
IMG Annotation Pipeline v.5.0.1 |
Added By |
JGI automated process
on 2019-05-02 |
Last Modified By |
JGI automated process
on 2019-05-10 |
Non-SP-Owner AP |
No |
PROJECT EXTERNAL REFERENCES | |
IMG Taxon ID
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3300034443 |
IMG RNA-Seq ID |
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Genbank
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Assembly Accession |
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Genbank Release Date |
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SRA Runs |
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ANALYSIS PROJECT COMPOSITION | |
Study |
Marine sediment archaeal communities from Little Sippewissett salt marsh, Falmouth, MA, United States |
Number of Studies
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1 |
Number of Biosamples
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1 |
Number of Projects
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1 |
Number of Related Analysis Projects
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0 |
Derived Analysis Projects
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0 |
JGI INFORMATION | |
ITS Analysis Project ID
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1233197 (Portal) |
ITS Analysis Project Name
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Pseudomonas putida 60 cell sort MMB.PSCntrl.SYBR.02.J7 |
ITS Analysis Product Name
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Amplified, Targeted, Cell Enrichment |
ITS NCBI Taxon ID |
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ITS Version Number |
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