Studies
|
40,442 |
|
Biosamples
|
81,883 |
|
Sequencing Projects
|
315,421 |
|
Analysis Projects
|
249,982 |
| Organisms | 370,280 |
| ANALYSIS PROJECT INFORMATION | |
|---|---|
|
GOLD Analysis Project ID
|
Ga0376431 |
| Analysis Project Name Prefix |
Enriched cells from marin sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.PSCntrl.SYBR.02.J7 |
|
Analysis Project Name Suffix
|
|
|
Analysis Project Type
|
Metagenome - Cell Enrichment |
|
IMG Submission ID
|
211213 |
| Completion Status |
Complete |
|
Completion Date
|
2019-06-29 |
| PI | Roland Hatzenpichler |
|
Description
|
|
| Visibility | Public |
| ANALYSIS PROJECT METADATA | |
|
Assembly Method
(MIGS-30)
|
spades v. 3.13.0 |
|
IMG Decontamination
|
|
|
IMG Decontamination Method
|
|
| GenePRIMP |
|
|
Scaffold Count
|
252 |
|
Contig Count
|
|
|
Gene Calling Method
(MIGS-32)
|
|
| Gene Count |
1727 |
| Estimated Size |
1504108 |
|
Sequencing Depth
(MIGS-31.1)
|
|
| Annotation Pipeline |
IMG Annotation Pipeline v.5.0.1 |
| Added By |
JGI automated process
on 2019-05-02 |
| Last Modified By |
JGI automated process
on 2019-05-10 |
| Non-SP-Owner AP |
No |
| PROJECT EXTERNAL REFERENCES | |
|
IMG Taxon ID
|
3300034443 |
| IMG RNA-Seq ID |
|
|
Genbank
|
|
| Assembly Accession |
|
| SRA Runs |
|
| ANALYSIS PROJECT COMPOSITION | |
| Study |
Marine sediment archaeal communities from Little Sippewissett salt marsh, Falmouth, MA, United States |
|
Number of Studies
|
1 |
|
Number of Biosamples
|
1 |
|
Number of Projects
|
1 |
|
Number of Related Analysis Projects
|
0 |
|
Derived Analysis Projects
|
0 |
| JGI INFORMATION | |
|
ITS Analysis Project ID
|
1233197 (Portal) |
|
ITS Analysis Project Name
|
Pseudomonas putida 60 cell sort MMB.PSCntrl.SYBR.02.J7 |
|
ITS Analysis Product Name
|
Amplified, Targeted, Cell Enrichment |
| ITS NCBI Taxon ID |
|
| ITS Version Number |
|
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