Studies
|
53,971 |
|
Biosamples
|
170,218 |
|
Sequencing Projects
|
480,756 |
|
Analysis Projects
|
363,488 |
| Organisms | 467,901 |
| ANALYSIS PROJECT INFORMATION | |
|---|---|
|
GOLD Analysis Project ID
|
Ga0376344 |
| Analysis Project Name |
Lentimicrobiaceae bacterium DeMMO3_5 |
|
Analysis Project Name Suffix
|
|
|
Analysis Project Type
|
Metagenome-Assembled Genome |
|
IMG Submission ID
|
214277 |
|
NCBI BioProject Accession
|
|
|
NCBI BioSample Accession
|
|
| Completion Status |
Complete |
|
IMG Completion Date
|
2019-07-08 |
| PI | Magdalena Osburn |
|
Analysis Project Description
|
Metagenome assembled genome from microbial DNA extracted from 10L of subsurface aquifer fluids collected 2000 feet below surface. |
| Visibility | Public |
| ANALYSIS PROJECT METADATA | |
| GOLD Organism Name |
Lentimicrobiaceae bacterium DeMMO3_5 |
|
NCBI Taxonomy ID
|
1840213 |
| Phylum | IGNAVIBACTERIAE (ZB1) |
| Phylogeny Suggestion |
|
|
Genus
|
|
| Species |
Lentimicrobiaceae bacterium DeMMO3_5 |
| Strain |
DeMMO3_5 |
| Domain |
BACTERIAL |
| NCBI Superkingdom |
Bacteria |
| NCBI Kingdom |
|
|
Number of tRNAs
|
|
|
tRNA Software
|
|
|
Completeness Strategy
|
|
|
Scaffold Count
|
94 |
|
Contig Count
|
|
|
Binning Method
|
MetaBat2 |
|
Binning Parameters
|
|
|
Reassembly Attempted
|
|
|
MAG Coverage Software
|
|
|
Gene Calling Method
(MIGS-32)
|
|
| Gene Count |
3902 |
| Estimated Size |
4671881 |
|
Sequencing Depth
(MIGS-31.1)
|
|
| Contamination Percentage |
|
| Completeness Percentage |
|
| Genbank Anomalous Assembly |
|
| Genbank Anomalous Reason |
|
| Annotation Pipeline |
IMG Annotation Pipeline v.5.0.3 |
| Added By |
Caitlin Casar
on 2019-05-02 |
| Last Modified By |
JGI automated process
on 2021-08-17 |
|
ORF Comparison Tools
|
|
|
16S Recovered
|
|
|
16S Recovery Software
|
|
| PROJECT EXTERNAL REFERENCES | |
|
IMG Taxon ID
|
2829054882 |
|
Genbank Accession
|
|
| Genbank Release Date |
|
| Genome Publication |
|
| ANALYSIS PROJECT COMPOSITION | |
| Study |
Terrestrial subsurface fluid microbial community from Deep Mine Microbial Observatory in Lead, South Dakota, USA |
| Source Analysis Project |
Terrestrial subsurface fluid microbial community from Deep Mine Microbial Observatory in Lead, South Dakota, USA - DeMMO3 |
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