ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0374517
Analysis Project Name Metatranscriptome of soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_July_plot1_rep1 (Metagenome Metatranscriptome)
Analysis Project Name Stem Metatranscriptome of soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_July_plot1_rep1
Analysis Project Name Suffix
Analysis Project Type Metatranscriptome Analysis
IMG Submission ID 218907
Completion Status Complete
IMG Completion Date 2019-11-23
PI Willm Martens-Habbena
Analysis Project Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) megahit v. 1.1.2
Scaffold Count 354373
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 412716
Estimated Size 178328350
Sequencing Depth (MIGS-31.1)
Genbank Anomalous Assembly
Genbank Anomalous Reason
Annotation Pipeline IMG Annotation Pipeline v.5.0.3
Added By JGI automated process on 2019-04-12
Last Modified By JGI automated process on 2022-06-18
ORF Comparison Tools
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300036536
IMG RNA-Seq ID
Genbank Accession
Genbank Release Date
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Soil microbial communities from Everglades Agricultural Area, Florida, United States
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 2
JGI INFORMATION
JGI Data Utilization Status Unrestricted
ITS Analysis Project ID 1228668 (Portal)
ITS Analysis Project Name EAA2017_July_plot1_rep1 metatranscriptome Annotation
ITS Analysis Product Name Metagenome Metatranscriptome
ITS Version Number 1
JGI Award DOI 10.46936/10.25585/60000949

 

 

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