Studies
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56,011 |
|
Biosamples
|
183,990 |
|
Sequencing Projects
|
508,072 |
|
Analysis Projects
|
381,502 |
| Organisms | 480,513 |
| ANALYSIS PROJECT INFORMATION | |
|---|---|
|
GOLD Analysis Project ID
|
Ga0373876 |
| Analysis Project Name |
Dehalobacter restrictus BinKB1TCBm1 |
|
Analysis Project Name Suffix
|
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|
Analysis Project Type
|
Metagenome-Assembled Genome |
|
IMG Submission ID
|
209420 |
|
NCBI BioProject Accession
|
|
|
NCBI BioSample Accession
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|
| Completion Status |
Complete |
|
IMG Completion Date
|
2019-05-31 |
| PI | Elizabeth A. Edwards |
|
Analysis Project Description
|
Dehalobacter restrictus MAG abundant during dechlorination of 1,2,4-trichlorobenzene to dichlorobenzenes with methanol as electron donor. |
| Visibility | Public |
| ANALYSIS PROJECT METADATA | |
| GOLD Organism Name |
Dehalobacter restrictus BinKB1TCBm1 |
|
NCBI Taxonomy ID
|
55583 |
| Phylum | FIRMICUTES |
| Phylogeny Suggestion |
Bacteria; Terrabacteria group; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Dehalobacter |
|
Genus
|
Dehalobacter |
| Species |
Dehalobacter restrictus |
| Strain |
BinKB1TCBm1 |
| Domain |
BACTERIAL |
| NCBI Superkingdom |
Bacteria |
| NCBI Kingdom |
|
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Number of tRNAs
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tRNA Software
|
|
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Completeness Strategy
|
|
|
Scaffold Count
|
56 |
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Contig Count
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Binning Method
|
maxbin 2.2.6 |
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Binning Parameters
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Reassembly Attempted
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MAG Coverage Software
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Gene Calling Method
(MIGS-32)
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| Gene Count |
3321 |
| Estimated Size |
3213795 |
|
Sequencing Depth
(MIGS-31.1)
|
|
| Contamination Percentage |
|
| Completeness Percentage |
|
| Genbank Anomalous Assembly |
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| Genbank Anomalous Reason |
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| Annotation Pipeline |
IMG Annotation Pipeline v.5.0.0 |
| Added By | Camilla Nesbø on 2019-03-20 |
| Last Modified By | JGI automated process on 2019-04-14 |
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ORF Comparison Tools
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16S Recovered
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16S Recovery Software
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| PROJECT EXTERNAL REFERENCES | |
|
IMG Taxon ID
|
2821530269 |
|
Genbank Accession
|
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| Genbank Release Date |
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| Genome Publication |
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| ANALYSIS PROJECT COMPOSITION | |
| Study |
Metagenomes from 1,2,4-trichlorobenzene dechlorinating enrichment cultures |
| Source Analysis Project |
Laboratory-enriched microbial communities from a contaminated site in Ontario, Canada - KB1_TCB MSP |
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