Studies
|
56,329 |
|
Biosamples
|
196,776 |
|
Sequencing Projects
|
525,145 |
|
Analysis Projects
|
385,404 |
| Organisms | 484,214 |
| ANALYSIS PROJECT INFORMATION | |
|---|---|
|
GOLD Analysis Project ID
|
Ga0373719 |
| Analysis Project Name |
Trichodesmium sp. ROT.47 |
|
Analysis Project Name Suffix
|
|
|
Analysis Project Type
|
Metagenome-Assembled Genome |
|
IMG Submission ID
|
209277 |
|
NCBI BioProject Accession
|
|
|
NCBI BioSample Accession
|
|
| Completion Status |
Complete |
|
IMG Completion Date
|
2019-06-01 |
| PI | Martin Ostrowski |
|
Analysis Project Description
|
Trichodesmium sp. ROT.47 |
| Visibility | Public |
| ANALYSIS PROJECT METADATA | |
| GOLD Organism Name |
Trichodesmium sp. ROT.47 |
|
NCBI Taxonomy ID
|
1207 |
| Phylum | CYANOBACTERIOTA |
| Phylogeny Suggestion |
d__Bacteria;p__Cyanobacteria;c__;o__Oscillatoriales;f__Microcoleaceae;g__Trichodesmium;s__Trichodesmium erythraeum |
|
Genus
|
Trichodesmium |
| Species |
Trichodesmium sp. ROT.47 |
| Strain |
ROT.47 |
| Domain |
BACTERIAL |
| NCBI Superkingdom |
Bacteria |
| NCBI Kingdom |
|
|
Number of tRNAs
|
|
|
tRNA Software
|
|
|
Completeness Strategy
|
|
|
Scaffold Count
|
1363 |
|
Contig Count
|
1363 |
|
Binning Method
|
MetaBat, CONCOCT, Metawrap refiner |
|
Binning Parameters
|
|
|
Reassembly Attempted
|
|
|
MAG Coverage Software
|
|
|
Gene Calling Method
(MIGS-32)
|
|
| Gene Count |
4554 |
| Estimated Size |
5039933 |
|
Sequencing Depth
(MIGS-31.1)
|
|
| Contamination Percentage |
|
| Completeness Percentage |
|
| Genbank Anomalous Assembly |
|
| Genbank Anomalous Reason |
|
| Annotation Pipeline |
IMG Annotation Pipeline v.5.0.0 |
| Added By | Martin Ostrowski on 2019-03-11 |
| Last Modified By | JGI automated process on 2023-03-24 |
|
ORF Comparison Tools
|
|
|
16S Recovered
|
|
|
16S Recovery Software
|
|
| PROJECT EXTERNAL REFERENCES | |
|
IMG Taxon ID
|
2821474806 |
|
Genbank Accession
|
|
| Genbank Release Date |
|
| Genome Publication |
|
| ANALYSIS PROJECT COMPOSITION | |
| Study |
Marine microbial communities from benthic and pelagic environments in Australia |
| Source Analysis Project |
Combined Assembly of marine microbial communities from pelagic environments in Australia |
You are going to add the following user to your analysis project, project, biosample and study.
Contact Name/Email: Do you want to continue?
You are going to remove permissions for the following user to your analysis project, project, biosample and study.
Contact Name/Email: Do you want to continue?
Changing the AP visibility will also change visibility on the following items:
Do you want to continue with this visibility change?
Changing the AP visibility will also change downgrade visibility on the following items:
Do you want to continue with this visibility change?
