ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0372808
Analysis Project Name Prefix Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE5
Analysis Project Name Suffix
Analysis Project Type Metatranscriptome Analysis
IMG Submission ID 218906
Completion Status Complete
IMG Completion Date 2019-11-22
PI Petr Baldrian
Analysis Project Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) megahit v. MEGAHIT v1.1.2
Scaffold Count 197505
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 236870
Estimated Size 111484870
Sequencing Depth (MIGS-31.1)
Annotation Pipeline IMG Annotation Pipeline v.5.0.3
Added By JGI automated process on 2019-02-22
Last Modified By JGI automated process on 2020-12-05
ORF Comparison Tools
16S Recovered
16S Recovery Software
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300036459
IMG RNA-Seq ID
Genbank Accession
Genbank Release Date
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Soil, plant litter and rhizosphere microbial communities from European coniferous forests
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 2
JGI INFORMATION
ITS Analysis Project ID 1205444 (Portal)
ITS Analysis Project Name NRE5 metatranscriptome Annotation
ITS Analysis Product Name Metagenome Metatranscriptome
ITS Version Number 1

 

 

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