ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0371493
Analysis Project Name Prefix Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1742 RNA GHGhigh gp2
Analysis Project Name Suffix (NovaSeq)
Analysis Project Type Metatranscriptome Analysis
IMG Submission ID 211227
Completion Status Complete
Completion Date 2019-06-13
PI Graeme Attwood
Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) megahit v. MEGAHIT v1.1.2
IMG Decontamination
IMG Decontamination Method
GenePRIMP
Scaffold Count 1603237
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 1937425
Estimated Size 934430118
Sequencing Depth (MIGS-31.1)
Annotation Pipeline IMG Annotation Pipeline v.5.0.3
Added By JGI automated process on 2019-02-14
Last Modified By JGI automated process on 2019-06-14
Non-SP-Owner AP No
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300035054
IMG RNA-Seq ID
Genbank
Assembly Accession
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Rumen microbial communities from sheep, dairy cows and beef cattle from various locations
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 3
Derived Analysis Projects 1
JGI INFORMATION
ITS Analysis Project ID 1242395 (Portal)
ITS Analysis Project Name 1742 RNA GHGhigh gp2 Annotation NovaSeq
ITS Analysis Product Name Metagenome Metatranscriptome
ITS NCBI Taxon ID
ITS Version Number

 

 

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