ANALYSIS PROJECT INFORMATION | |||
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GOLD Analysis Project ID
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Ga0365390 |
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Analysis Project Name Prefix |
Pseudomonas sp. TN43 |
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Analysis Project Name Suffix
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Analysis Project Type
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Genome Analysis (Isolate) |
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IMG Submission ID
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210974 | ||
Completion Status |
Complete |
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IMG Completion Date
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2019-05-29 |
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PI | Sarah Lebeis | ||
PI Name |
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Analysis Project Description
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Visibility | Public | ||
ANALYSIS PROJECT METADATA | |||
Assembly Method
(MIGS-30)
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spades v. 3.13.0 |
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IMG Decontamination
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IMG Decontamination Method
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Scaffold Count
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30 |
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Contig Count
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Gene Calling Method
(MIGS-32)
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Gene Count |
5578 |
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Estimated Size |
6046470 |
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Sequencing Depth
(MIGS-31.1)
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248x |
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Annotation Pipeline |
IMG Annotation Pipeline v.5.0.1 |
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Added By |
JGI automated process
on 2019-01-18 |
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Last Modified By |
JGI automated process
on 2020-12-05 |
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ORF Comparison Tools
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16S Recovered
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16S Recovery Software
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PROJECT EXTERNAL REFERENCES | |||
IMG Taxon ID
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2824522127 |
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Genbank Accession
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Assembly Accession |
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Genbank Release Date |
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ANALYSIS PROJECT COMPOSITION | |||
Study |
Characterizing functional chemotaxis receptors in different root zones |
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Number of Studies
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1 |
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Number of Projects
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1 |
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Number of Related Analysis Projects
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0 |
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JGI INFORMATION | |||
ITS Analysis Project ID
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1232633 (Portal) |
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ITS Analysis Project Name
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Pseudomonas sp. TN43 |
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ITS Analysis Product Name
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Microbial Minimal Draft Isolate Genome |
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ITS Version Number |
1 |
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