Studies
|
56,334 |
|
Biosamples
|
196,988 |
|
Sequencing Projects
|
525,360 |
|
Analysis Projects
|
384,991 |
| Organisms | 484,221 |
| ANALYSIS PROJECT INFORMATION | |
|---|---|
|
GOLD Analysis Project ID
|
Ga0364659 |
| Analysis Project Name |
Metatranscriptome of cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow Y-3 rumen fluid (Metagenome Metatranscriptome Expression - Other) (Mapping to IMG Taxon 3300030773) |
| Analysis Project Name Stem |
Metatranscriptome of cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow Y-3 rumen fluid |
|
Analysis Project Name Suffix
|
(Mapping to IMG Taxon 3300030773) |
|
Analysis Project Type
|
Metatranscriptome mapping (other) |
|
IMG Submission ID
|
|
| Completion Status |
Incomplete |
|
IMG Completion Date
|
|
| PI | Matthias Hess |
|
Analysis Project Description
|
|
| Visibility | Public |
| ANALYSIS PROJECT METADATA | |
|
Assembly Method
(MIGS-30)
|
|
|
Scaffold Count
|
|
|
Contig Count
|
|
|
Gene Calling Method
(MIGS-32)
|
|
| Gene Count |
|
| Estimated Size |
|
|
Sequencing Depth
(MIGS-31.1)
|
|
| Genbank Anomalous Assembly |
|
| Genbank Anomalous Reason |
|
| Annotation Pipeline |
|
| Added By | JGI automated process on 2019-01-17 |
| Last Modified By | JGI automated process on 2021-12-08 |
|
ORF Comparison Tools
|
|
| PROJECT EXTERNAL REFERENCES | |
|
IMG Taxon ID
|
|
| IMG RNA-Seq ID |
|
|
Genbank Accession
|
|
| Genbank Release Date |
|
| ANALYSIS PROJECT COMPOSITION | |
| Study |
Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis |
|
Number of Projects
|
1 |
| Reference Analysis Project |
Coassembly of Cow Y Rumen Fluid |
| JGI INFORMATION | |
|
JGI Data Utilization Status
|
Restricted |
|
ITS Analysis Project ID
|
1057075 (Portal) |
|
ITS Analysis Project Name
|
Cow rumen Metatranscriptome - Cow Y-3 rumen fluid Mapping to Cow Y Rumen Fluid |
|
ITS Analysis Product Name
|
Metagenome Metatranscriptome Expression - Other |
| ITS Version Number |
1 |
|
Library Names
|
|
|
JGI Award DOI
|
10.46936/10.25585/60000804 |
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