ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0352991
Analysis Project Name Metatranscriptome of cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow Y-3 rumen fluid (Eukaryote Metatranscriptome)
Analysis Project Name Stem Metatranscriptome of cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow Y-3 rumen fluid
Analysis Project Name Suffix
Analysis Project Type Metatranscriptome Analysis
IMG Submission ID 205944
Completion Status Complete
IMG Completion Date 2019-01-16
PI Matthias Hess
Analysis Project Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) rnnotator v. 3.3.2
Scaffold Count 157848
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 164263
Estimated Size 88630052
Sequencing Depth (MIGS-31.1)
Genbank Anomalous Assembly
Genbank Anomalous Reason
Annotation Pipeline IMG Annotation Pipeline v.4.16.6
Added By JGI automated process on 2019-01-10
Last Modified By JGI automated process on 2021-12-08
ORF Comparison Tools
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300032643
IMG RNA-Seq ID
Genbank Accession
Genbank Release Date
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 7
JGI INFORMATION
JGI Data Utilization Status Restricted
ITS Analysis Project ID 1044504 (Portal)
ITS Analysis Project Name AP Cow rumen Metatranscriptome - Cow Y-3 rumen fluid1401920896805
ITS Analysis Product Name Eukaryote Metatranscriptome
ITS Version Number 1
JGI Award DOI 10.46936/10.25585/60000804

 

 

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