Studies
|
56,335 |
|
Biosamples
|
196,988 |
|
Sequencing Projects
|
525,361 |
|
Analysis Projects
|
384,993 |
| Organisms | 484,222 |
| ANALYSIS PROJECT INFORMATION | |
|---|---|
|
GOLD Analysis Project ID
|
Ga0352978 |
| Analysis Project Name |
Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow X-2 corn stover (Eukaryote Metatranscriptome) |
| Analysis Project Name Stem |
Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow X-2 corn stover |
|
Analysis Project Name Suffix
|
|
|
Analysis Project Type
|
Metatranscriptome Analysis |
|
IMG Submission ID
|
205950 |
| Completion Status |
Complete |
|
IMG Completion Date
|
2019-01-16 |
| PI | Matthias Hess |
|
Analysis Project Description
|
|
| Visibility | Public |
| ANALYSIS PROJECT METADATA | |
|
Assembly Method
(MIGS-30)
|
rnnotator v. 3.3.2 |
|
Scaffold Count
|
136995 |
|
Contig Count
|
|
|
Gene Calling Method
(MIGS-32)
|
|
| Gene Count |
143660 |
| Estimated Size |
90691327 |
|
Sequencing Depth
(MIGS-31.1)
|
|
| Genbank Anomalous Assembly |
|
| Genbank Anomalous Reason |
|
| Annotation Pipeline |
IMG Annotation Pipeline v.4.16.6 |
| Added By | JGI automated process on 2019-01-10 |
| Last Modified By | JGI automated process on 2021-12-08 |
|
ORF Comparison Tools
|
|
| PROJECT EXTERNAL REFERENCES | |
|
IMG Taxon ID
|
3300032576 |
| IMG RNA-Seq ID |
|
|
Genbank Accession
|
|
| Genbank Release Date |
|
| SRA Runs |
|
| ANALYSIS PROJECT COMPOSITION | |
| Study |
Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis |
|
Number of Studies
|
1 |
|
Number of Biosamples
|
1 |
|
Number of Projects
|
1 |
|
Number of Related Analysis Projects
|
7 |
| JGI INFORMATION | |
|
JGI Data Utilization Status
|
Restricted |
|
ITS Analysis Project ID
|
1044465 (Portal) |
|
ITS Analysis Project Name
|
AP Cow rumen Metatranscriptome - Cow X-2 corn stover1401920896451 |
|
ITS Analysis Product Name
|
Eukaryote Metatranscriptome |
| ITS Version Number |
1 |
|
Library Names
|
WHNA |
|
JGI Award DOI
|
10.46936/10.25585/60000804 |
You are going to add the following user to your analysis project, project, biosample and study.
Contact Name/Email: Do you want to continue?
You are going to remove permissions for the following user to your analysis project, project, biosample and study.
Contact Name/Email: Do you want to continue?
Changing the AP visibility will also change visibility on the following items:
Do you want to continue with this visibility change?
Changing the AP visibility will also change downgrade visibility on the following items:
Do you want to continue with this visibility change?
