ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0352977
Analysis Project Name Prefix Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow X-1 switchgrass
Analysis Project Name Suffix
Analysis Project Type Metatranscriptome Analysis
IMG Submission ID 205946
Completion Status Complete
Completion Date 2019-01-16
PI Matthias Hess
Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) rnnotator v. 3.3.2
IMG Decontamination
IMG Decontamination Method
GenePRIMP
Scaffold Count 158636
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 186846
Estimated Size 85353047
Sequencing Depth (MIGS-31.1)
Annotation Pipeline IMG Annotation Pipeline v.4.16.6
Added By JGI automated process on 2019-01-10
Last Modified By JGI automated process on 2019-01-16
Non-SP-Owner AP No
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300032599
IMG RNA-Seq ID
Genbank
Assembly Accession
ANALYSIS PROJECT COMPOSITION
Study Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 7
Derived Analysis Projects 1
JGI INFORMATION
ITS Analysis Project ID 1044462 (Portal)
ITS Analysis Project Name AP Cow rumen Metatranscriptome - Cow X-1 switchgrass1401920896426
ITS Analysis Product Name Eukaryote Metatranscriptome
ITS NCBI Taxon ID
ITS Version Number

 

 

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