ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0348332
Analysis Project Name Prefix FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)
Analysis Project Name Suffix
Analysis Project Type Combined Assembly
IMG Submission ID 205749
NCBI BioProject ID
NCBI BioProject Accession
NCBI BioSample Accession
Completion Status Complete
IMG Completion Date 2019-02-08
PI Petr Baldrian
Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30)
IMG Decontamination
IMG Decontamination Method
GenePRIMP
Scaffold Count 4783835
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 5699729
Estimated Size 2514668051
Sequencing Depth (MIGS-31.1)
Annotation Pipeline IMG Annotation Pipeline v.4.16.6
Added By JGI automated process on 2019-01-07
Last Modified By JGI automated process on 2019-05-03
Non-SP-Owner AP No
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300032515
IMG RNA-Seq ID
Genbank
Assembly Accession
Genbank Release Date
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Soil, plant litter and rhizosphere microbial communities from European coniferous forests
Number of Studies 1
Number of Biosamples 63
Number of Projects 63
Derived Analysis Projects 0
JGI INFORMATION
ITS Analysis Project ID 1239244 (Portal)
ITS Analysis Project Name FICUS49499 Metatranscriptome Czech Republic combined assembly
ITS Analysis Product Name Co-Assembly - Metagenome Metatranscriptome
ITS NCBI Taxon ID
ITS Version Number

 

 

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