ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0334664
Analysis Project Name Prefix Metatranscriptome of plant-associated microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col_C
Analysis Project Name Suffix (v2)
Analysis Project Type Metatranscriptome Analysis
IMG Submission ID 204665
Completion Status Complete
IMG Completion Date 2018-12-18
PI Sarah Lebeis
Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) megahit v. MEGAHIT v1.1.2
Scaffold Count 28395
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 34818
Estimated Size 27271972
Sequencing Depth (MIGS-31.1)
Annotation Pipeline IMG Annotation Pipeline v.4.16.6
Added By JGI automated process on 2018-12-09
Last Modified By JGI automated process on 2020-03-28
Non-SP-Owner AP No
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300032188
IMG RNA-Seq ID
Genbank Accession
Assembly Accession
Genbank Release Date
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Aquatic microbiome from duckweeds obtained from Rutgers Duckweed Stock Cooperative (RDSC)
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 1
JGI INFORMATION
ITS Analysis Project ID 1236123 (Portal)
ITS Analysis Project Name Arabidopsis Plant RNA Col_C Annotation(v2)
ITS Analysis Product Name Metagenome Metatranscriptome
ITS Version Number

 

 

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