Studies
|
49,818 |
|
Biosamples
|
146,900 |
|
Sequencing Projects
|
434,114 |
|
Analysis Projects
|
326,457 |
| Organisms | 417,276 |
| ANALYSIS PROJECT INFORMATION | |
|---|---|
|
GOLD Analysis Project ID
|
Ga0326261 |
| Analysis Project Name Prefix |
Haloferula sp. SB-MAG 18 |
|
Analysis Project Name Suffix
|
|
|
Analysis Project Type
|
Metagenome-Assembled Genome |
|
IMG Submission ID
|
203278 |
|
NCBI BioProject ID
|
|
|
NCBI BioProject Accession
|
|
|
NCBI BioSample Accession
|
|
| Completion Status |
Complete |
|
IMG Completion Date
|
2018-11-17 |
| PI | Emilie Skoog |
|
Analysis Project Description
|
|
| Visibility | Public |
| ANALYSIS PROJECT METADATA | |
| GOLD Organism Name |
Haloferula sp. SB-MAG 18 |
|
NCBI Taxonomy ID
|
574899 |
| Phylum | VERRUCOMICROBIA |
| Phylogeny Suggestion |
|
|
Genus
|
Haloferula |
| Species |
Haloferula sp. SB-MAG 18 |
| Strain |
SB-MAG 18 |
| Domain |
BACTERIAL |
| NCBI Superkingdom |
Bacteria |
| NCBI Kingdom |
|
|
Number of tRNAs
|
|
|
tRNA Software
|
|
|
Completeness Strategy
|
|
|
Scaffold Count
|
329 |
|
Contig Count
|
|
|
Binning Method
|
MetaBAT v2.12.1 |
|
Binning Parameters
|
|
|
Reassembly Attempted
|
|
|
MAG Coverage Software
|
|
|
Gene Calling Method
(MIGS-32)
|
|
| Gene Count |
3492 |
| Estimated Size |
3928975 |
|
Sequencing Depth
(MIGS-31.1)
|
|
| Contamination Percentage |
|
| Completeness Percentage |
|
| Annotation Pipeline |
IMG Annotation Pipeline v.4.16.5 |
| Added By |
Emilie Skoog
on 2018-11-13 |
| Last Modified By |
JGI automated process
on 2020-06-20 |
|
ORF Comparison Tools
|
|
|
16S Recovered
|
|
|
16S Recovery Software
|
|
| PROJECT EXTERNAL REFERENCES | |
|
IMG Taxon ID
|
2808607013 |
| IMG Metagenome bin count |
|
| IMG Predicted viruses |
|
|
Genbank Accession
|
|
| Genbank Release Date |
|
| MAG Publication |
|
| ANALYSIS PROJECT COMPOSITION | |
| Study |
Coastal marine microbial mats from various locations |
| Source Analysis Project |
Stromatolite biofilm microbial communities from Shark Bay, Australia - S1 |
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