ANALYSIS PROJECT INFORMATION | |
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GOLD Analysis Project ID
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Ga0316050 |
Analysis Project Name |
Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic - CSE4 (Metagenome Metatranscriptome) (v2) |
Analysis Project Name Stem |
Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic - CSE4 |
Analysis Project Name Suffix
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(v2) |
Analysis Project Type
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Metatranscriptome Analysis |
IMG Submission ID
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203811 |
Completion Status |
Complete |
IMG Completion Date
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2018-11-29 |
PI | Petr Baldrian |
Analysis Project Description
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|
Visibility | Public |
ANALYSIS PROJECT METADATA | |
Assembly Method
(MIGS-30)
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megahit v. 1.1.2 |
Scaffold Count
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41137 |
Contig Count
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|
Gene Calling Method
(MIGS-32)
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|
Gene Count |
44306 |
Estimated Size |
19128670 |
Sequencing Depth
(MIGS-31.1)
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|
Genbank Anomalous Assembly |
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Genbank Anomalous Reason |
|
Annotation Pipeline |
IMG Annotation Pipeline v.4.16.5 |
Added By |
JGI automated process
on 2018-10-06 |
Last Modified By |
JGI automated process
on 2022-05-25 |
ORF Comparison Tools
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|
PROJECT EXTERNAL REFERENCES | |
IMG Taxon ID
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3300031829 |
IMG RNA-Seq ID |
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Genbank Accession
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Genbank Release Date |
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SRA Runs |
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ANALYSIS PROJECT COMPOSITION | |
Study |
Soil, plant litter and rhizosphere microbial communities from European coniferous forests |
Number of Studies
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1 |
Number of Biosamples
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1 |
Number of Projects
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1 |
Number of Related Analysis Projects
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2 |
JGI INFORMATION | |
JGI Data Utilization Status
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Unrestricted |
ITS Analysis Project ID
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1227951 (Portal) |
ITS Analysis Project Name
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CSE4 metatranscriptome Annotation(v2) |
ITS Analysis Product Name
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Metagenome Metatranscriptome |
ITS Version Number |
2 |
JGI Award DOI
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10.46936/fics.proj.2016.49499/60006010 |
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