Studies
|
54,052 |
|
Biosamples
|
174,371 |
|
Sequencing Projects
|
485,198 |
|
Analysis Projects
|
368,872 |
| Organisms | 468,053 |
| ANALYSIS PROJECT INFORMATION | |
|---|---|
|
GOLD Analysis Project ID
|
Ga0316050 |
| Analysis Project Name |
Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic - CSE4 (Metagenome Metatranscriptome) (v2) |
| Analysis Project Name Stem |
Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic - CSE4 |
|
Analysis Project Name Suffix
|
(v2) |
|
Analysis Project Type
|
Metatranscriptome Analysis |
|
IMG Submission ID
|
203811 |
| Completion Status |
Complete |
|
IMG Completion Date
|
2018-11-29 |
| PI | Petr Baldrian |
|
Analysis Project Description
|
|
| Visibility | Public |
| ANALYSIS PROJECT METADATA | |
|
Assembly Method
(MIGS-30)
|
megahit v. 1.1.2 |
|
Scaffold Count
|
41137 |
|
Contig Count
|
|
|
Gene Calling Method
(MIGS-32)
|
|
| Gene Count |
44306 |
| Estimated Size |
19128670 |
|
Sequencing Depth
(MIGS-31.1)
|
|
| Genbank Anomalous Assembly |
|
| Genbank Anomalous Reason |
|
| Annotation Pipeline |
IMG Annotation Pipeline v.4.16.5 |
| Added By |
JGI automated process
on 2018-10-06 |
| Last Modified By |
JGI automated process
on 2022-05-25 |
|
ORF Comparison Tools
|
|
| PROJECT EXTERNAL REFERENCES | |
|
IMG Taxon ID
|
3300031829 |
| IMG RNA-Seq ID |
|
|
Genbank Accession
|
|
| Genbank Release Date |
|
| SRA Runs |
|
| ANALYSIS PROJECT COMPOSITION | |
| Study |
Soil, plant litter and rhizosphere microbial communities from European coniferous forests |
|
Number of Studies
|
1 |
|
Number of Biosamples
|
1 |
|
Number of Projects
|
1 |
|
Number of Related Analysis Projects
|
2 |
| JGI INFORMATION | |
|
JGI Data Utilization Status
|
Unrestricted |
|
ITS Analysis Project ID
|
1227951 (Portal) |
|
ITS Analysis Project Name
|
CSE4 metatranscriptome Annotation(v2) |
|
ITS Analysis Product Name
|
Metagenome Metatranscriptome |
| ITS Version Number |
2 |
|
JGI Award DOI
|
10.46936/fics.proj.2016.49499/60006010 |
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