ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0316044
Analysis Project Name Prefix Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRA1
Analysis Project Name Suffix (v2)
Analysis Project Type Metatranscriptome Analysis
IMG Submission ID 203813
Completion Status Complete
IMG Completion Date 2018-11-28
PI Petr Baldrian
Analysis Project Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) megahit v. MEGAHIT v1.1.2
Scaffold Count 78545
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 86153
Estimated Size 52006805
Sequencing Depth (MIGS-31.1)
Annotation Pipeline IMG Annotation Pipeline v.4.16.5
Added By JGI automated process on 2018-10-06
Last Modified By JGI automated process on 2020-12-05
ORF Comparison Tools
16S Recovered
16S Recovery Software
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300031810
IMG RNA-Seq ID
Genbank Accession
Genbank Release Date
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Soil, plant litter and rhizosphere microbial communities from European coniferous forests
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 2
JGI INFORMATION
ITS Analysis Project ID 1227939 (Portal)
ITS Analysis Project Name CRA1 metatranscriptome Annotation(v2)
ITS Analysis Product Name Metagenome Metatranscriptome
ITS Version Number 2

 

 

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