Studies
|
52,459 |
|
Biosamples
|
170,240 |
|
Sequencing Projects
|
472,597 |
|
Analysis Projects
|
359,688 |
| Organisms | 460,468 |
| ANALYSIS PROJECT INFORMATION | |
|---|---|
|
GOLD Analysis Project ID
|
Ga0314795 |
| Analysis Project Name |
Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R4 (Metagenome Metatranscriptome) |
| Analysis Project Name Stem |
Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R4 |
|
Analysis Project Name Suffix
|
|
|
Analysis Project Type
|
Metatranscriptome Analysis |
|
IMG Submission ID
|
211149 |
| Completion Status |
Complete |
|
IMG Completion Date
|
2019-11-11 |
| PI | Paul Dijkstra |
|
Analysis Project Description
|
|
| Visibility | Public |
| ANALYSIS PROJECT METADATA | |
|
Assembly Method
(MIGS-30)
|
megahit v. MEGAHIT v1.1.2 |
|
Scaffold Count
|
533046 |
|
Contig Count
|
|
|
Gene Calling Method
(MIGS-32)
|
|
| Gene Count |
610256 |
| Estimated Size |
259146587 |
|
Sequencing Depth
(MIGS-31.1)
|
|
| Genbank Anomalous Assembly |
|
| Genbank Anomalous Reason |
|
| Annotation Pipeline |
IMG Annotation Pipeline v.5.0.1 |
| Added By |
JGI automated process
on 2018-09-28 |
| Last Modified By |
JGI automated process
on 2021-11-07 |
|
ORF Comparison Tools
|
|
| PROJECT EXTERNAL REFERENCES | |
|
IMG Taxon ID
|
3300034670 |
| IMG RNA-Seq ID |
|
|
Genbank Accession
|
|
| Genbank Release Date |
|
| SRA Runs |
|
| ANALYSIS PROJECT COMPOSITION | |
| Study |
Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States |
|
Number of Studies
|
1 |
|
Number of Biosamples
|
1 |
|
Number of Projects
|
1 |
|
Number of Related Analysis Projects
|
0 |
| JGI INFORMATION | |
|
JGI Data Utilization Status
|
Unrestricted |
|
ITS Analysis Project ID
|
1206019 (Portal) |
|
ITS Analysis Project Name
|
C8R4 metaT Annotation |
|
ITS Analysis Product Name
|
Metagenome Metatranscriptome |
| ITS Version Number |
1 |
|
JGI Award DOI
|
10.46936/10.25585/60000955 |
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