ANALYSIS PROJECT INFORMATION | |
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GOLD Analysis Project ID
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Ga0308202 |
Analysis Project Name |
Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 (Metagenome Metatranscriptome) |
Analysis Project Name Stem |
Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 |
Analysis Project Name Suffix
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Analysis Project Type
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Metatranscriptome Analysis |
IMG Submission ID
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200938 |
Completion Status |
Complete |
IMG Completion Date
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2018-10-26 |
PI | Eoin Brodie |
Analysis Project Description
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Visibility | Public |
ANALYSIS PROJECT METADATA | |
Assembly Method
(MIGS-30)
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megahit v. 1.1.2 |
Scaffold Count
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510188 |
Contig Count
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Gene Calling Method
(MIGS-32)
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Gene Count |
585039 |
Estimated Size |
255106051 |
Sequencing Depth
(MIGS-31.1)
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Genbank Anomalous Assembly |
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Genbank Anomalous Reason |
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Annotation Pipeline |
IMG Annotation Pipeline v.4.16.5 |
Added By | JGI automated process on 2018-07-13 |
Last Modified By | JGI automated process on 2022-06-18 |
ORF Comparison Tools
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PROJECT EXTERNAL REFERENCES | |
IMG Taxon ID
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3300030902 |
IMG RNA-Seq ID |
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Genbank Accession
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Genbank Release Date |
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SRA Runs |
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ANALYSIS PROJECT COMPOSITION | |
Study |
Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States |
Number of Studies
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1 |
Number of Biosamples
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1 |
Number of Projects
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1 |
Number of Related Analysis Projects
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2 |
JGI INFORMATION | |
JGI Data Utilization Status
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Unrestricted |
ITS Analysis Project ID
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1203887 (Portal) |
ITS Analysis Project Name
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ER_RNA_356 Annotation |
ITS Analysis Product Name
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Metagenome Metatranscriptome |
ITS Version Number |
1 |
Library Names
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CWSPU |
JGI Award DOI
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10.46936/fics.proj.2017.49991/60006232 |
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