Studies
|
56,337 |
|
Biosamples
|
196,975 |
|
Sequencing Projects
|
525,356 |
|
Analysis Projects
|
385,119 |
| Organisms | 484,232 |
| ANALYSIS PROJECT INFORMATION | |||
|---|---|---|---|
|
GOLD Analysis Project ID
|
Ga0304825 |
||
| Analysis Project Name |
Luteibacter rhizovicinus LP_13_YM |
||
|
Analysis Project Name Suffix
|
|
||
|
Analysis Project Type
|
Genome Analysis (Isolate) |
||
|
IMG Submission ID
|
193364 | ||
| Completion Status |
Complete |
||
|
IMG Completion Date
|
2018-08-06 |
||
| PI | Carolin Frank | ||
|
Analysis Project Description
|
|
||
| Visibility | Public | ||
| ANALYSIS PROJECT METADATA | |||
|
Assembly Method
(MIGS-30)
|
spades v. 3.11.0 |
||
|
IMG Decontamination
|
Yes |
||
|
IMG Decontamination Method
|
PhiX decontamination |
||
|
Scaffold Count
|
22 |
||
|
Contig Count
|
|
||
|
Gene Calling Method
(MIGS-32)
|
|
||
| Gene Count |
3911 |
||
| Estimated Size |
4471323 |
||
|
Sequencing Depth
(MIGS-31.1)
|
335x |
||
| Genbank Anomalous Assembly |
|
||
| Genbank Anomalous Reason |
|
||
| Annotation Pipeline |
IMG Annotation Pipeline v.4.16.4 |
||
| Added By | JGI automated process on 2018-06-02 | ||
| Last Modified By | JGI automated process on 2021-11-07 | ||
|
ORF Comparison Tools
|
|
||
| PROJECT EXTERNAL REFERENCES | |||
|
IMG Taxon ID
|
2788499832 |
||
|
Genbank Accession
|
|
||
| Genbank Release Date |
|
||
| ANALYSIS PROJECT COMPOSITION | |||
| Study |
Above-ground endophytic microbial communities from plants in different locations in the United States |
||
|
Number of Studies
|
1 |
||
|
Number of Projects
|
1 |
||
|
Number of Related Analysis Projects
|
0 |
||
| JGI INFORMATION | |||
|
JGI Data Utilization Status
|
Unrestricted |
||
|
ITS Analysis Project ID
|
1193349 (Portal) |
||
|
ITS Analysis Project Name
|
Luteibactor rhizovicina LP_13_YM |
||
|
ITS Analysis Product Name
|
Microbial Minimal Draft Isolate Genome |
||
| ITS Version Number |
1 |
||
|
Library Names
|
CTOHB |
||
|
JGI Award DOI
|
10.46936/10.25585/60000936 |
||
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