ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0302048
Analysis Project Name Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow X-1 corn stover (Eukaryote Community Metatranscriptome)
Analysis Project Name Stem Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow X-1 corn stover
Analysis Project Name Suffix
Analysis Project Type Metatranscriptome Analysis
IMG Submission ID 192445
Completion Status Complete
IMG Completion Date 2018-07-18
PI Matthias Hess
Analysis Project Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) MEGAHIT v. 1.0.4b
Scaffold Count 772829
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 842858
Estimated Size 427995326
Sequencing Depth (MIGS-31.1)
Genbank Anomalous Assembly
Genbank Anomalous Reason
Annotation Pipeline IMG Annotation Pipeline v.4.16.4
Added By JGI automated process on 2018-05-16
Last Modified By JGI automated process on 2021-12-08
ORF Comparison Tools
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300028555
IMG RNA-Seq ID
Genbank Accession
Genbank Release Date
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 24
JGI INFORMATION
JGI Data Utilization Status Restricted
ITS Analysis Project ID 1203010 (Portal)
ITS Analysis Project Name AP Cow rumen Metatranscriptome - Cow X-1 corn stover1401920896367(v10)
ITS Analysis Product Name Eukaryote Community Metatranscriptome
ITS Version Number 9
Library Names WHHX
JGI Award DOI