Studies
|
56,337 |
|
Biosamples
|
196,975 |
|
Sequencing Projects
|
525,356 |
|
Analysis Projects
|
385,119 |
| Organisms | 484,232 |
| ANALYSIS PROJECT INFORMATION | |||||
|---|---|---|---|---|---|
|
GOLD Analysis Project ID
|
Ga0302022 |
||||
| Analysis Project Name |
Syntrophaceae bacterium CG2_30_49_12 |
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|
Analysis Project Name Suffix
|
|
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|
Analysis Project Type
|
Metagenome-Assembled Genome |
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|
IMG Submission ID
|
193282 | ||||
|
NCBI BioProject Accession
|
PRJNA297582 |
||||
|
NCBI BioSample Accession
|
SAMN04328280 |
||||
| Completion Status |
Complete |
||||
|
IMG Completion Date
|
2018-07-25 |
||||
| PI | Unknown | ||||
|
Analysis Project Description
|
Submitting a public genome from NCBI/GenBank to IMG for analysis. |
||||
| Visibility | Public | ||||
| ANALYSIS PROJECT METADATA | |||||
| GOLD Organism Name |
Syntrophaceae bacterium CG2_30_49_12 |
||||
|
NCBI Taxonomy ID
|
1805377 |
||||
| Phylum | THERMODESULFOBACTERIOTA | ||||
| Phylogeny Suggestion |
|
||||
|
Genus
|
|
||||
| Species |
Syntrophaceae bacterium CG2_30_49_12 |
||||
| Strain |
CG2_30_49_12 |
||||
| Domain |
BACTERIAL |
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| NCBI Superkingdom |
Bacteria |
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| NCBI Kingdom |
|
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|
Number of tRNAs
|
|
||||
|
tRNA Software
|
|
||||
|
Completeness Strategy
|
|
||||
|
Scaffold Count
|
223 |
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|
Contig Count
|
|
||||
|
Binning Method
|
ABAWACA v 1.0, ABAWACA v 1.07, ESOM, CONCOCT, Metabat v1, Maxbin v2 |
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|
Binning Parameters
|
|
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|
Reassembly Attempted
|
|
||||
|
MAG Coverage Software
|
|
||||
|
Gene Calling Method
(MIGS-32)
|
|
||||
| Gene Count |
2148 |
||||
| Estimated Size |
2030295 |
||||
|
Sequencing Depth
(MIGS-31.1)
|
|
||||
| Contamination Percentage |
|
||||
| Completeness Percentage |
|
||||
| Genbank Anomalous Assembly |
No |
||||
| Genbank Anomalous Reason |
|
||||
| Annotation Pipeline |
IMG Annotation Pipeline v.4.16.4 |
||||
| Added By | JGI automated process on 2018-05-15 | ||||
| Last Modified By | JGI automated process on 2018-08-02 | ||||
|
ORF Comparison Tools
|
|
||||
|
16S Recovered
|
|
||||
|
16S Recovery Software
|
|
||||
| PROJECT EXTERNAL REFERENCES | |||||
|
IMG Taxon ID
|
2786546941 |
||||
|
Genbank Accession
|
|
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| Genbank Release Date |
|
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| Genome Publication |
|
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| ANALYSIS PROJECT COMPOSITION | |||||
| Study |
Freshwater microbial communities from Crystal Geyser, Utah, USA |
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| Source Analysis Project |
Freshwater microbial communities from Crystal Geyser, Utah, USA - CG_3.0 |
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