ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0265343
Analysis Project Name Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Rhizobium bacterium JGI PFNR15_E10
Analysis Project Name Suffix
Analysis Project Type Metagenome - Single Particle Sort
IMG Submission ID 183659
Completion Status Complete
IMG Completion Date 2018-03-31
PI Carolin Frank
Analysis Project Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) spades v. 3.10.1
Scaffold Count 52
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 331
Estimated Size 271541
Sequencing Depth (MIGS-31.1)
Genbank Anomalous Assembly
Genbank Anomalous Reason
Annotation Pipeline IMG Annotation Pipeline v.4.16.2
Added By JGI automated process on 2018-03-30
Last Modified By JGI automated process on 2022-06-04
ORF Comparison Tools
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300024575
Genbank Accession
Genbank Release Date
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Above-ground endophytic microbial communities from plants in different locations in the United States
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 0
Derived Analysis Projects (DAP) 0
JGI INFORMATION
JGI Data Utilization Status Unrestricted
ITS Analysis Project ID 1192161 (Portal)
ITS Analysis Project Name Rhizobium bacterium JGI PFNR15_E10
ITS Analysis Product Name Single Particle Sort, 16S Negative, Unscreened
ITS Version Number 1
JGI Award DOI 10.46936/10.25585/60000936

 

 

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