Studies
|
56,036 |
|
Biosamples
|
191,586 |
|
Sequencing Projects
|
515,942 |
|
Analysis Projects
|
381,633 |
| Organisms | 480,439 |
| ANALYSIS PROJECT INFORMATION | |
|---|---|
|
GOLD Analysis Project ID
|
Ga0261681 |
| Analysis Project Name |
Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Rhizobium bacterium JGI PFNR15_G4 |
|
Analysis Project Name Suffix
|
|
|
Analysis Project Type
|
Metagenome - Single Particle Sort |
|
IMG Submission ID
|
183155 |
| Completion Status |
Complete |
|
IMG Completion Date
|
2018-03-25 |
| PI | Carolin Frank |
|
Analysis Project Description
|
|
| Visibility | Public |
| ANALYSIS PROJECT METADATA | |
|
Assembly Method
(MIGS-30)
|
spades v. 3.10.1 |
|
Scaffold Count
|
123 |
|
Contig Count
|
|
|
Gene Calling Method
(MIGS-32)
|
|
| Gene Count |
933 |
| Estimated Size |
784908 |
|
Sequencing Depth
(MIGS-31.1)
|
|
| Genbank Anomalous Assembly |
|
| Genbank Anomalous Reason |
|
| Annotation Pipeline |
IMG Annotation Pipeline v.4.16.1 |
| Added By | JGI automated process on 2018-03-08 |
| Last Modified By | JGI automated process on 2022-06-04 |
|
ORF Comparison Tools
|
|
| PROJECT EXTERNAL REFERENCES | |
|
IMG Taxon ID
|
3300024422 |
|
Genbank Accession
|
|
| Genbank Release Date |
|
| SRA Runs |
|
| ANALYSIS PROJECT COMPOSITION | |
| Study |
Above-ground endophytic microbial communities from plants in different locations in the United States |
|
Number of Studies
|
1 |
|
Number of Biosamples
|
1 |
|
Number of Projects
|
1 |
|
Number of Related Analysis Projects
|
0 |
|
Derived Analysis Projects (DAP)
|
0 |
| JGI INFORMATION | |
|
JGI Data Utilization Status
|
Unrestricted |
|
ITS Analysis Project ID
|
1192154 (Portal) |
|
ITS Analysis Project Name
|
Rhizobium bacterium JGI PFNR15_G4 |
|
ITS Analysis Product Name
|
Single Particle Sort, 16S Negative, Unscreened |
| ITS Version Number |
1 |
|
Library Names
|
CNBZN |
|
JGI Award DOI
|
10.46936/10.25585/60000936 |
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