Studies
|
56,035 |
|
Biosamples
|
191,586 |
|
Sequencing Projects
|
515,842 |
|
Analysis Projects
|
381,622 |
| Organisms | 480,341 |
| ANALYSIS PROJECT INFORMATION | |
|---|---|
|
GOLD Analysis Project ID
|
Ga0208783 |
| Analysis Project Name |
Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNA (SPAdes) |
| Analysis Project Name Stem |
Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNA |
|
Analysis Project Name Suffix
|
(SPAdes) |
|
Analysis Project Type
|
Metagenome Analysis |
|
IMG Submission ID
|
184529 |
| Completion Status |
Complete |
|
IMG Completion Date
|
2018-04-13 |
| PI | Barbara Campbell |
|
Analysis Project Description
|
|
| Visibility | Public |
| ANALYSIS PROJECT METADATA | |
|
Assembly Method
(MIGS-30)
|
spades v. 3.11.1 |
|
Scaffold Count
|
1230533 |
|
Contig Count
|
|
|
Gene Calling Method
(MIGS-32)
|
|
| Gene Count |
1795930 |
| Estimated Size |
820033257 |
|
Sequencing Depth
(MIGS-31.1)
|
|
| Genbank Anomalous Assembly |
|
| Genbank Anomalous Reason |
|
| Annotation Pipeline |
IMG Annotation Pipeline v.4.16.2 |
| Added By | JGI automated process on 2017-08-13 |
| Last Modified By | JGI automated process on 2021-11-07 |
|
ORF Comparison Tools
|
|
| PROJECT EXTERNAL REFERENCES | |
|
IMG Taxon ID
|
3300025872 |
| IMG Metagenome bin count |
11 |
| IMG Predicted viruses |
1358 |
|
Genbank Accession
|
|
| Genbank Release Date |
|
| SRA Runs |
|
| ANALYSIS PROJECT COMPOSITION | |
| Study |
Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series |
|
Number of Studies
|
1 |
|
Number of Biosamples
|
1 |
|
Number of Projects
|
1 |
|
Number of Related Analysis Projects
|
1 |
|
Derived Analysis Projects (DAP)
|
0 |
| JGI INFORMATION | |
|
JGI Data Utilization Status
|
Unrestricted |
|
ITS Analysis Project ID
|
1165298 (Portal) |
|
ITS Analysis Project Name
|
DEBay_Sum_0.19_D_>0.8_DNA (SPAdes) |
|
ITS Analysis Product Name
|
Metagenome Minimal Draft |
| ITS Version Number |
2 |
|
Library Names
|
APTPG |
|
JGI Award DOI
|
10.46936/10.25585/60000748 |
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