ANALYSIS PROJECT INFORMATION | |
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GOLD Analysis Project ID
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Ga0208163 |
Analysis Project Name |
Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.753 (SPAdes) |
Analysis Project Name Stem |
Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.753 |
Analysis Project Name Suffix
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(SPAdes) |
Analysis Project Type
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Metagenome Analysis |
IMG Submission ID
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187615 |
Completion Status |
Complete |
IMG Completion Date
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2018-05-09 |
PI | Holly Simon |
Analysis Project Description
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Visibility | Public |
ANALYSIS PROJECT METADATA | |
Assembly Method
(MIGS-30)
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spades v. 3.11.1 |
Scaffold Count
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288545 |
Contig Count
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Gene Calling Method
(MIGS-32)
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Gene Count |
387428 |
Estimated Size |
169874970 |
Sequencing Depth
(MIGS-31.1)
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Genbank Anomalous Assembly |
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Genbank Anomalous Reason |
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Annotation Pipeline |
IMG Annotation Pipeline v.4.16.2 |
Added By | JGI automated process on 2017-08-13 |
Last Modified By | JGI automated process on 2021-11-07 |
ORF Comparison Tools
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PROJECT EXTERNAL REFERENCES | |
IMG Taxon ID
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3300027198 |
IMG Metagenome bin count |
9 |
IMG Predicted viruses |
37 |
Genbank Accession
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Genbank Release Date |
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SRA Runs |
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ANALYSIS PROJECT COMPOSITION | |
Study |
Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series |
Number of Studies
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1 |
Number of Biosamples
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1 |
Number of Projects
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1 |
Number of Related Analysis Projects
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2 |
Derived Analysis Projects (DAP)
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0 |
JGI INFORMATION | |
JGI Data Utilization Status
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Unrestricted |
ITS Analysis Project ID
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1164678 (Portal) |
ITS Analysis Project Name
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Columbia river estuary metaG S.753 (SPAdes) |
ITS Analysis Product Name
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Metagenome Minimal Draft |
ITS Version Number |
2 |
Library Names
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AUSNT |
JGI Award DOI
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