ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0208163
Analysis Project Name Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.753 (SPAdes)
Analysis Project Name Stem Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.753
Analysis Project Name Suffix (SPAdes)
Analysis Project Type Metagenome Analysis
IMG Submission ID 187615
Completion Status Complete
IMG Completion Date 2018-05-09
PI Holly Simon
Analysis Project Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) spades v. 3.11.1
Scaffold Count 288545
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 387428
Estimated Size 169874970
Sequencing Depth (MIGS-31.1)
Genbank Anomalous Assembly
Genbank Anomalous Reason
Annotation Pipeline IMG Annotation Pipeline v.4.16.2
Added By JGI automated process on 2017-08-13
Last Modified By JGI automated process on 2021-11-07
ORF Comparison Tools
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300027198
IMG Metagenome bin count 9
IMG Predicted viruses 37
Genbank Accession
Genbank Release Date
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 2
Derived Analysis Projects (DAP) 0
JGI INFORMATION
JGI Data Utilization Status Unrestricted
ITS Analysis Project ID 1164678 (Portal)
ITS Analysis Project Name Columbia river estuary metaG S.753 (SPAdes)
ITS Analysis Product Name Metagenome Minimal Draft
ITS Version Number 2
Library Names AUSNT
JGI Award DOI