ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0208021
Analysis Project Name Estuarine microbial communities from the Columbia River estuary - metaG S.737 (SPAdes)
Analysis Project Name Stem Estuarine microbial communities from the Columbia River estuary - metaG S.737
Analysis Project Name Suffix (SPAdes)
Analysis Project Type Metagenome Analysis
IMG Submission ID 187617
Completion Status Complete
IMG Completion Date 2018-05-09
PI Holly Simon
Analysis Project Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) spades v. 3.11.1
Scaffold Count 273324
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 348553
Estimated Size 147343491
Sequencing Depth (MIGS-31.1)
Genbank Anomalous Assembly
Genbank Anomalous Reason
Annotation Pipeline IMG Annotation Pipeline v.4.16.2
Added By JGI automated process on 2017-08-13
Last Modified By JGI automated process on 2021-11-07
ORF Comparison Tools
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300027191
IMG Metagenome bin count 3
IMG Predicted viruses 20
Genbank Accession
Genbank Release Date
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 2
Derived Analysis Projects (DAP) 0
JGI INFORMATION
JGI Data Utilization Status Unrestricted
ITS Analysis Project ID 1164536 (Portal)
ITS Analysis Project Name Columbia river estuary metaG S.737 (SPAdes)
ITS Analysis Product Name Metagenome Minimal Draft
ITS Version Number 2
Library Names AUSNW
JGI Award DOI 10.46936/10.25585/60000867

 

 

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