Studies
|
56,036 |
|
Biosamples
|
191,586 |
|
Sequencing Projects
|
515,942 |
|
Analysis Projects
|
381,633 |
| Organisms | 480,439 |
| ANALYSIS PROJECT INFORMATION | |||||||
|---|---|---|---|---|---|---|---|
|
GOLD Analysis Project ID
|
Ga0138989 |
||||||
| Analysis Project Name |
Rhizorhabdus histidinilytica UM2 |
||||||
|
Analysis Project Name Suffix
|
|
||||||
|
Analysis Project Type
|
Genome Analysis (Isolate) |
||||||
|
IMG Submission ID
|
102291 | ||||||
| Completion Status |
Complete |
||||||
|
IMG Completion Date
|
2016-11-22 |
||||||
| PI | William Whitman | ||||||
|
Analysis Project Description
|
|
||||||
| Visibility | Public | ||||||
| ANALYSIS PROJECT METADATA | |||||||
|
Assembly Method
(MIGS-30)
|
spades v. 3.6.2 |
||||||
|
IMG Decontamination
|
Yes |
||||||
|
IMG Decontamination Method
|
PhiX decontamination |
||||||
|
Scaffold Count
|
59 |
||||||
|
Contig Count
|
|
||||||
|
Gene Calling Method
(MIGS-32)
|
|
||||||
| Gene Count |
5278 |
||||||
| Estimated Size |
5473339 |
||||||
|
Sequencing Depth
(MIGS-31.1)
|
171x |
||||||
| Genbank Anomalous Assembly |
No |
||||||
| Genbank Anomalous Reason |
|
||||||
| Annotation Pipeline |
IMG Annotation Pipeline v.4.13.0 |
||||||
| Added By | JGI automated process on 2016-10-06 | ||||||
| Last Modified By | JGI automated process on 2022-02-15 | ||||||
|
ORF Comparison Tools
|
|
||||||
| PROJECT EXTERNAL REFERENCES | |||||||
|
IMG Taxon ID
|
2706795026 |
||||||
|
Genbank Accession
|
|
||||||
| Genbank Release Date |
2017-03-18 |
||||||
| ANALYSIS PROJECT COMPOSITION | |||||||
| Study |
Genomic Encyclopedia of Type Strains, Phase III (KMG-III): the genomes of soil and plant-associated and newly described type strains |
||||||
|
Number of Studies
|
1 |
||||||
|
Number of Projects
|
1 |
||||||
|
Number of Related Analysis Projects
|
0 |
||||||
| JGI INFORMATION | |||||||
|
JGI Data Utilization Status
|
Unrestricted |
||||||
|
ITS Analysis Project ID
|
1118283 (Portal) |
||||||
|
ITS Analysis Project Name
|
Sphingomonas histidinilytica UM2 |
||||||
|
ITS Analysis Product Name
|
Microbial Minimal Draft Isolate Genome |
||||||
| ITS Version Number |
1 |
||||||
|
Library Names
|
BHAYA |
||||||
|
JGI Award DOI
|
10.46936/10.25585/60001401 |
||||||
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