ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0136756
Analysis Project Name Prefix Pseudomonas alcaligenes RU38D
Analysis Project Name Suffix
Analysis Project Type Genome Analysis (Isolate)
IMG Submission ID 106580
Completion Status Complete
IMG Completion Date 2016-12-09
PI Sarah Lebeis
Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) spades v. 3.6.2
IMG Decontamination Yes
IMG Decontamination Method PhiX decontamination
Scaffold Count 10
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 4025
Estimated Size 4246731
Sequencing Depth (MIGS-31.1) 262x
Annotation Pipeline IMG Annotation Pipeline v.4.13.0
Added By JGI automated process on 2016-08-30
Last Modified By JGI automated process on 2020-03-28
Non-SP-Owner AP No
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 2708743161
Genbank Accession
Genbank ID FTNW00000000 (GCA_900156545.1)
Release Date 2017-04-17
NCBI Genbank Version FTNW01
Assembly Accession GCA_900156545.1
Genbank Release Date 2017-04-17
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Aquatic microbiome from duckweeds obtained from Rutgers Duckweed Stock Cooperative (RDSC)
Number of Studies 1
Number of Projects 1
Number of Related Analysis Projects 0
JGI INFORMATION
ITS Analysis Project ID 1115888 (Portal)
ITS Analysis Project Name Pseudomonas alcaligenes RU38D
ITS Analysis Product Name Microbial Minimal Draft Isolate Genome
ITS Version Number 1

 

 

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