ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0132172
Analysis Project Name Shimia sp. MIT1352
Analysis Project Name Suffix
Analysis Project Type Genome Analysis (Isolate)
IMG Submission ID 91175
Completion Status Complete
IMG Completion Date 2016-06-30
PI Sallie Chisholm
Analysis Project Description Annotation of Shimia sp. MIT1352 (v20160629)
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) PacBio SMRT Analysis 2.3; RS_HGAP_Assembly.2 with 0.85 Minimum Polymerase Read Quality; Manual circularization; Consensus identification using Quiver in RS_Resequencing.1
IMG Decontamination No
IMG Decontamination Method
Scaffold Count 1
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 4290
Estimated Size 4374300
Sequencing Depth (MIGS-31.1)
Genbank Anomalous Assembly
Genbank Anomalous Reason
Annotation Pipeline IMG Annotation Pipeline v.4.11.4
Added By Paul Berube on 2016-06-29
Last Modified By JGI automated process on 2018-03-16
ORF Comparison Tools
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 2681813578
Genbank Accession
Genbank Release Date
ANALYSIS PROJECT COMPOSITION
Study ProPortal-Culture-Genomes
Number of Studies 1
Number of Projects 1
Number of Related Analysis Projects 0

 

 

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