ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0129341
Analysis Project Name Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.8_RNA2 (Metagenome Metatranscriptome)
Analysis Project Name Stem Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.8_RNA2
Analysis Project Name Suffix
Analysis Project Type Metatranscriptome Analysis
IMG Submission ID 109917
Completion Status Complete
IMG Completion Date 2017-01-09
PI Barbara Campbell
Analysis Project Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) megahit v. 1.0.6
Scaffold Count 391673
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 478692
Estimated Size 218575569
Sequencing Depth (MIGS-31.1)
Genbank Anomalous Assembly
Genbank Anomalous Reason
Annotation Pipeline IMG Annotation Pipeline v.4.14.3
Added By JGI automated process on 2016-06-10
Last Modified By JGI automated process on 2021-11-07
ORF Comparison Tools
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300012966
IMG RNA-Seq ID
Genbank Accession
Genbank Release Date
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 1
JGI INFORMATION
JGI Data Utilization Status Unrestricted
ITS Analysis Project ID 1110895 (Portal)
ITS Analysis Project Name CPBay_Sum_15_0.8_RNA2 Annotation
ITS Analysis Product Name Metagenome Metatranscriptome
ITS Version Number 1
JGI Award DOI 10.46936/10.25585/60000748

 

 

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